PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_435A95A74.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 266aa    MW: 31300.6 Da    PI: 6.0558
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_435A95A74.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.2e-08117159145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            r +W++ + +l+++a +q+G++ ++ I + ++  +++ q++ ++ 
  Traes_6BL_435A95A74.2 117 RAKWSKSDTDLFYQALQQFGSD-FAMIQQLFP-DKSRDQVRQKFK 159
                            569*******************.*********.*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159639.3E-26110190No hitNo description
PROSITE profilePS5129310.005115166IPR017884SANT domain
Gene3DG3DSA:1.10.10.609.2E-5116163IPR009057Homeodomain-like
SMARTSM007174.1E-8116164IPR001005SANT/Myb domain
CDDcd001672.79E-5119160No hitNo description
SuperFamilySSF466892.09E-10119166IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MKDTLAEQPE KKLSHRIRPK RAKVSEVKTL LEKPDHEIDR MKLSVMHLRL LHDARERIKS  60
KTIPSGPSSS NQSTSQFGDT NSFDHFEENY DNDRRENHVL ENATKLNYHS YMNKQARAKW  120
SKSDTDLFYQ ALQQFGSDFA MIQQLFPDKS RDQVRQKFKT EEKKHPMQVH DAILHRSRDN  180
LYLKQVIKQL NIEDLQRDIN STHKQEVASI EGDTGNEHVL QDFMEEENDS NWSDKELGMR  240
QSEVREGEHV SGNADDDLDL DVFDWY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2500790.0AK250079.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf66i09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174330.11e-179transcription factor TFIIIB component B''-like isoform X2
TrEMBLA0A3B6PPY80.0A0A3B6PPY8_WHEAT; Uncharacterized protein
TrEMBLA0A446WMU00.0A0A446WMU0_TRITD; Uncharacterized protein
STRINGTraes_6BL_435A95A74.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-33MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]