PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_4301B7F15.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 73aa    MW: 8481.72 Da    PI: 8.98
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_4301B7F15.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.78.5e-1328562856
                           HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56
                            +r +L+++lgL+ rq+k+WFqNrR+++k
  Traes_6BL_4301B7F15.1 28 PQRMHLSRELGLEPRQIKFWFQNRRTQMK 56
                           699***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0032362IPR001356Homeobox domain
SuperFamilySSF466892.69E-112761IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-132763IPR009057Homeodomain-like
PfamPF000463.9E-102856IPR001356Homeobox domain
PROSITE profilePS5007111.8552958IPR001356Homeobox domain
CDDcd000864.74E-82959No hitNo description
PRINTSPR000314.2E-52938IPR000047Helix-turn-helix motif
PROSITE patternPS0002703356IPR017970Homeobox, conserved site
PRINTSPR000314.2E-53854IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
IELVSPSSSL ANLLSCVCAR VQDVQGVPQR MHLSRELGLE PRQIKFWFQN RRTQMKAQHE  60
RADNCFLRAE NDK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3766543e-64AK376654.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3130F06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570542.11e-24homeobox-leucine zipper protein ROC8
SwissprotQ69T589e-24ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A287UUN42e-23A0A287UUN4_HORVV; Uncharacterized protein
TrEMBLA0A287UUN91e-23A0A287UUN9_HORVV; Uncharacterized protein
TrEMBLA0A287UUQ02e-24A0A287UUQ0_HORVV; Uncharacterized protein
TrEMBLA0A287UV591e-23A0A287UV59_HORVV; Uncharacterized protein
TrEMBLA0A287UV637e-24A0A287UV63_HORVV; Uncharacterized protein
TrEMBLA0A3B6PR493e-23A0A3B6PR49_WHEAT; Uncharacterized protein
TrEMBLA0A3B6PSK43e-23A0A3B6PSK4_WHEAT; Uncharacterized protein
TrEMBLA0A3B6PSN43e-23A0A3B6PSN4_WHEAT; Uncharacterized protein
TrEMBLA0A446WME33e-23A0A446WME3_TRITD; Uncharacterized protein
TrEMBLA0A446WMH13e-23A0A446WMH1_TRITD; Uncharacterized protein
TrEMBLA0A446WMJ43e-23A0A446WMJ4_TRITD; Uncharacterized protein
TrEMBLF2EKH73e-23F2EKH7_HORVV; Predicted protein
STRINGTraes_6BL_4301B7F15.17e-48(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.19e-22homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]