PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_2801119FA.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 999aa MW: 110026 Da PI: 9.017 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.4 | 1.9e-06 | 309 | 328 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f + G C++G++C+++H+ Traes_6BL_2801119FA.2 309 CHEFVK-GRCSRGASCRYIHD 328 9*****.*************7 PP | |||||||
2 | zf-CCCH | 24.2 | 5.8e-08 | 365 | 386 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++C+ffa+ G C++G++C++ H Traes_6BL_2801119FA.2 365 KRPCKFFAE-GRCRRGETCPYLH 386 689******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.032 | 221 | 245 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.906 | 224 | 246 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.835 | 303 | 330 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.033 | 306 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.8E-4 | 309 | 330 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-5 | 359 | 388 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.831 | 362 | 389 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-6 | 362 | 388 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-7 | 363 | 387 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-5 | 365 | 386 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 999 aa Download sequence Send to blast |
MAGVARKGRS KWDTQEISPD IVEISEDDSP PKNTDDRHKD VIPTQDLTND NGKRLGESSN 60 LKPDAFLHQG STEYEQERTD GLNKDVKERQ SKASSERSHA PRMAEEGHNN DDWGKLASLE 120 KATGNQAMSR NADDRRRGDG WGTAASRGYS SRVSSGPDAW KQRTRSPSPR GAWNRSRRNR 180 SGSRSRSRER VRGRSRSRSR SPYFDRGSDW RAERGRISGG PSLLCRDFTA GRCRRGLHCR 240 FPHEDGGRRQ FDEPYPADSR ERYGHQNKDF MDPREPDDYV RSRQPRGHFD EGTWERSEPR 300 RDYRASDQCH EFVKGRCSRG ASCRYIHDES ASHAGWRDDA RETAHVRGGP DSSFGNRTEH 360 RREQKRPCKF FAEGRCRRGE TCPYLHEEAP QSQMGPGASD EPPKYSGGRT PRGNYSNWGE 420 ETNATHAGSH ILSRDDRENP SSQHTARSDT GYGYKNRQLE DAGRDQYQII PQEEFGSQGR 480 NKPEMAASKQ PQFLSPIQTS ADSMNNDKVS DMDGLSASAT TGNLSMQTGI HAANLLGGQS 540 LSQIAQSQDA VPQTSGAPTH PVTSQQQDAT SMLPFNIQPH ESNFSLHPNR QDQFSNFSLH 600 PDRQDQFVAS QATANNSAPS MQNQPVAAPS MQNQPVAAPY MGHGQHSYTL GSQALPAFNG 660 HNFSVAGQVL QDRPTPFYAG QSQATVDMSN PNQESGTHSM QNTHSFQPVA PNMQAHSQAL 720 QGLSGVPSQD TGTQSIQNAH NFQPVAPPYM QSRGQTLQGL SILPSSSSSD KPGAPLVPPN 780 EEEIRRSLTS LAATLIMQPG TGAGLQLPQP ILNPSLMASL SAVEPSQWPW AQQQQAGTTQ 840 LARSEQQAPQ QTLPAPSTAV GSSNGNNPAP QSVGQTAATS VVTAPQAAEN KKVEAKAKDS 900 DGEQDGDKNK KGNKEESKAL KMFKLALADF VKDALKPTWK EGQLTREVHK TIVKKVVDKV 960 TSTVENTPPT KEKIDVYMSY SKEKLSKLVQ AYVGKYVKA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 199 | RVRGRSRSRSR |
2 | 191 | 199 | RGRSRSRSR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249720 | 0.0 | AK249720.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf45g01, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174956.1 | 0.0 | zinc finger CCCH domain-containing protein 55-like isoform X1 | ||||
Swissprot | Q6YYC0 | 0.0 | C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55 | ||||
TrEMBL | A0A3B6PRR9 | 0.0 | A0A3B6PRR9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6BL_2801119FA.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7766 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-08 | C3H family protein |
Publications ? help Back to Top | |||
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