PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_1392D6149.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 791aa    MW: 88195.3 Da    PI: 8.0523
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_1392D6149.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.12.7e-19699779186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                            +W+ +e++ Li++r em+e++++ k ++ lWee+s  + ++g++r+p qCk+ w +l ++y++ k+ e++      +t++yf+ ++
  Traes_6BL_1392D6149.2 699 KWKPEEIKSLIQLRGEMNEKFQTVKGRMVLWEEISGSLLKQGITRTPAQCKSVWTSLLQKYEESKKDEEN-----MQTWQYFSAMD 779
                            7******************************************************************998.....479******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.108.9E-6720271IPR001279Metallo-beta-lactamase
SuperFamilySSF562811.02E-7221436IPR001279Metallo-beta-lactamase
SMARTSM008491.4E-2433230IPR001279Metallo-beta-lactamase
PfamPF127061.2E-1045180IPR001279Metallo-beta-lactamase
PfamPF075211.1E-6379408IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.084692756IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.6E-6695758IPR009057Homeodomain-like
SMARTSM007170.005696758IPR001005SANT/Myb domain
PfamPF138374.2E-16698780No hitNo description
CDDcd122032.09E-21698763No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MEDSVKRKME QFYEGVDGPP LRVLPIGGLG EIGMNCMLVG NCDRYILIDA GVMFPDYDEF  60
GVQKIIPDTT FIKKWSHKIE AVIITHGHED HIGALPWVIP ALDSTTPIFA SSFTMELIKK  120
RLKEFGIFLS SRLKSFRVRN RFQAGPFEVE PIRVTHSIPD CCGLVLRCGD GTIFHTGDWK  180
IDESPVDGRI FDREALEELS KEGVTLMMSD STNILSPGRS TSESVVASSL LRHVSEAKGR  240
RVITTQFASN IHRIGSIKAA ADLTGRRLVF VGMSLRTYLE AAFRDGKAPL DPSTLVKAED  300
MDAYDPKNLL VVTTGSQAEP RAALNLASYG GSHALKLCKE DVLLYSAKVI PGNESRVMKM  360
LNRLTDLGPK IVMGKDAGLH TSGHAYHDEL EEVLQIVKPQ HFLPVHGELL FLKEHELLGR  420
STGIKHTTVI KNGEMLGVSH LRNRKVLSNG FVSLGKQDFK LMYSDGDKAF GTSTDLCIDE  480
RFRIASDGII FVSMEIFRPK PASPQSGLKG KFKITTRCLW LDNGRLLDAL YKAAHAALSS  540
CPLNCPLSHM ERMVSEILRK MVRKYSGKRP DVIVVASENT TVGFSEEVIN RHMSLDYEKT  600
RPENPEREAE ESIPEVMRTT PDDATTSSNG ESFFSPDLHQ PKTLDHFWES FKSPTAVKIA  660
RIVNASAQGN KPKLGKISII DKDSSTSAPA AAKSSRKNKW KPEEIKSLIQ LRGEMNEKFQ  720
TVKGRMVLWE EISGSLLKQG ITRTPAQCKS VWTSLLQKYE ESKKDEENMQ TWQYFSAMDS  780
FLSCEGEMAT K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A2e-852157819560RIBONUCLEASE J
5a0t_B2e-852157819560RIBONUCLEASE J
5a0v_A2e-852157819560RIBONUCLEASE J
5a0v_B2e-852157819560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2496120.0AK249612.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf47b03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191368.10.0uncharacterized protein LOC109777127
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A3B6PNA60.0A0A3B6PNA6_WHEAT; Uncharacterized protein
TrEMBLA0A446WC090.0A0A446WC09_TRITD; Uncharacterized protein
STRINGTraes_6BL_1392D6149.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49963542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]