PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_0D4DBDD0C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 361aa MW: 40481.8 Da PI: 7.4741 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.1 | 1.3e-07 | 35 | 54 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ Traes_6BL_0D4DBDD0C.1 35 CT-FYQNGVCSYGSRCRYEHV 54 66.6666***********997 PP | |||||||
2 | zf-CCCH | 24.9 | 3.5e-08 | 141 | 162 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG +C+ +Hg Traes_6BL_0D4DBDD0C.1 141 PICS-FAAAGTCPYGKKCPQMHG 162 5788.*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.943 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-4 | 2 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-7 | 5 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 5 | 29 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.0022 | 6 | 25 | No hit | No description |
PROSITE profile | PS50103 | 14.033 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-4 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 31 | 53 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.2E-5 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-5 | 35 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.836 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.01 | 138 | 163 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-5 | 142 | 162 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 9.32E-15 | 191 | 270 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 2.0E-11 | 199 | 265 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 7.39E-4 | 205 | 266 | No hit | No description |
SMART | SM00184 | 1.1E-6 | 206 | 263 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 1.7E-7 | 206 | 263 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.371 | 206 | 264 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 230 | 239 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.025 | 293 | 321 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.962 | 293 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MSIRSICKFF VNGACFKGDY CQFSHDWNDQ PNDVCTFYQN GVCSYGSRCR YEHVEVSSEY 60 TPPSTTAALA PFNSYRSWCP LCEGEIDVSN QTQKSLSACS VHQSTWRFDD EDSIPEDGNS 120 LSMSSALTAQ NQAPHPLAHL PICSFAAAGT CPYGKKCPQM HGDLCTTCGK QCLHPYRPSE 180 GGAHIKLCKR NNKRLEALKK SEEIECSVCL DRVLSKPTAA EKRFGLLPEC DHAFCITCIR 240 KWRSSSLTSS MDIDSTVKAC PICRKVSYYV IPSATWYSSK EEKQDIIDGY KAKLKSIDCR 300 YFDFGRDTCP FGSRCFYKHA YTDGRLEEPA TVAVLHFHAD NGSMEHARNI GLAYLLSRLH 360 L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372037 | 0.0 | AK372037.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2145F18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192975.1 | 0.0 | E3 ubiquitin-protein ligase makorin-like isoform X4 | ||||
Refseq | XP_020192977.1 | 0.0 | E3 ubiquitin-protein ligase makorin-like isoform X4 | ||||
Swissprot | Q5ZA07 | 1e-156 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A3B6PR33 | 0.0 | A0A3B6PR33_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6BL_0D4DBDD0C.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5326 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-117 | C3H family protein |
Publications ? help Back to Top | |||
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