PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_0644187E5.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 10084.9 Da PI: 6.5153 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.2 | 7.8e-08 | 4 | 51 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT+ +++ a + + + +W ++ar +g g++ ++k ++ + Traes_6BL_0644187E5.1 4 SWTAKQNKIFETALATYDEDtpdRWQKVARAVGDGKSVDEVKRHYEEL 51 7******************9*************************766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.8E-7 | 1 | 54 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 11.277 | 1 | 56 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 6.58E-12 | 3 | 58 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-5 | 4 | 51 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MSSSWTAKQN KIFETALATY DEDTPDRWQK VARAVGDGKS VDEVKRHYEE LLKDLHHIEY 60 AGGRRGSLYN ISGASSSNGN SWGSANEDHR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-18 | 4 | 59 | 10 | 64 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376021 | 2e-87 | AK376021.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3112J07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187005.1 | 4e-61 | protein RADIALIS-like 4 | ||||
Swissprot | F4JVB8 | 1e-21 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A3B6QJV5 | 5e-60 | A0A3B6QJV5_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6BL_0644187E5.1 | 1e-60 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 5e-24 | RAD-like 1 |
Publications ? help Back to Top | |||
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