PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_01A973403.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 72aa MW: 8017.44 Da PI: 11.4542 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 42.9 | 8.2e-14 | 1 | 37 | 39 | 71 |
E2F_TDP 39 vknkrRRiYDilNVLealnliek....kekneirwkg 71 +++k+RR+YDi+NVL++l+liek ++k+++rw g Traes_6BL_01A973403.1 1 MRTKVRRLYDIANVLSSLKLIEKtqvdTRKPAFRWLG 37 689**********************999*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02319 | 1.8E-11 | 1 | 37 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.58E-8 | 2 | 38 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 8.9E-13 | 3 | 38 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 72 aa Download sequence Send to blast |
MRTKVRRLYD IANVLSSLKL IEKTQVDTRK PAFRWLGMAG KPKAENGVTI VASPASKTLS 60 NKRVFGTELT NI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187635.1 | 2e-41 | E2F transcription factor-like E2FE isoform X1 | ||||
Refseq | XP_020187636.1 | 2e-41 | E2F transcription factor-like E2FE isoform X2 | ||||
Swissprot | Q8LSZ4 | 3e-19 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | A0A453PLA8 | 9e-43 | A0A453PLA8_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453PLF7 | 1e-41 | A0A453PLF7_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453PLG2 | 1e-41 | A0A453PLG2_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6BL_01A973403.1 | 1e-45 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3185 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.1 | 1e-21 | DP-E2F-like 1 |
Publications ? help Back to Top | |||
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