PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_DE46854EE.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 270aa    MW: 28821.6 Da    PI: 11.706
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_DE46854EE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.8e-08106131227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            kt+lC+ +     Ck Gd+C+FaHg+
  Traes_6AS_DE46854EE.1 106 KTKLCNKYNTAEGCKWGDKCHFAHGE 131
                            8***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.9813966IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-13102134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8103135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216104132IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-5106131IPR000571Zinc finger, CCCH-type
SuperFamilySSF548145.1E-6172211IPR009019K homology domain, prokaryotic type
PROSITE profilePS5008411.049175215IPR004088K Homology domain, type 1
PfamPF000131.9E-5177211IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.4E-6177212IPR004088K Homology domain, type 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
VPARRHDSQA TNPSQARRSY RVRARSDGRR RTQEGHGRRR RRRRQAHAST AGCPFGEGCH  60
FLHYFPGGHQ AVAKMSNLGG QAFAQPQGRM PAGSAVPDGQ PTPTVKTKLC NKYNTAEGCK  120
WGDKCHFAHG ERELGKHTFI NNSMPPRMGT RPIGHFGPPA MPGPAMTTPT GFGASSTAKV  180
SVDASLVGGI IGRGGVNTKQ ISGVTGAKLA IRLEDLTAAA AAVSREATSR PSCATTSRKD  240
RARLATDATL PMARTSCANR LPREVDLPTH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12843RRRTQEGHGRRRRRRR
22944RRTQEGHGRRRRRRRQ
33644GRRRRRRRQ
43743RRRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3907731e-156HQ390773.1 Triticum aestivum clone UCDTA01224 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164455.11e-107zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R06e-86C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A3B6NNN81e-160A0A3B6NNN8_WHEAT; Uncharacterized protein
STRINGTraes_6AS_DE46854EE.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-12C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]