PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AS_DBE4E3146.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 415aa MW: 45894.6 Da PI: 6.6269 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97 | 1.4e-30 | 229 | 283 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt eLHerFvea+++LGG ekAtPk +l+lmkv+gLt+ hvkSHLQ YR Traes_6AS_DBE4E3146.2 229 KTRMRWTLELHERFVEALKKLGGLEKATPKGVLKLMKVEGLTIFHVKSHLQNYRH 283 68****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.927 | 226 | 286 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.48E-16 | 226 | 283 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 228 | 283 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-23 | 229 | 283 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-8 | 231 | 282 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.5E-22 | 317 | 362 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MSTQSVLPVK DIIAPDSMAH TCNVPQPSAH QMFNAKSEIY SSADGISRVS YADLSDPNSS 60 SSSTFCASMY SASPTNSKLC WQISGLPFLP HPPKCEQQQF SAAQSSISAL LFAADHSDGG 120 QGHDEHSHDL KDFLNLSGNA SDSSFRGGGS SMDFSEQLEF QLLSEQLGIA ITDNEESPRL 180 DDIYGIAPQC SPSLLSPSSD HEDLRSGGSP VKVQLSSSPS SSGATTCSKT RMRWTLELHE 240 RFVEALKKLG GLEKATPKGV LKLMKVEGLT IFHVKSHLQN YRHVKYIPEK KEVKRPCSED 300 NKAKSTSGID SGKKKSFQMA EALRMQMEVQ KQLHEQLEVQ RKLQLRIEEH ARYLQRILEQ 360 QKARKSLVPK PEEKTEASTT SAPSLKCKIS DTEIEQNLQM DSRRPELQLD LESEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-23 | 229 | 286 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-23 | 229 | 286 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-23 | 229 | 286 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-23 | 229 | 286 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-23 | 229 | 286 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-23 | 229 | 286 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-23 | 229 | 286 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-23 | 229 | 286 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP330484 | 0.0 | KP330484.1 Triticum aestivum MYB transcription factor SM153-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187502.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 3-like | ||||
Refseq | XP_020187503.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 3-like | ||||
Refseq | XP_020187504.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 3-like | ||||
Swissprot | Q6YXZ4 | 1e-147 | PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3 | ||||
TrEMBL | A0A3B6NMT1 | 0.0 | A0A3B6NMT1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446V6L2 | 0.0 | A0A446V6L2_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AS_DBE4E3146.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4526 | 37 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 7e-66 | G2-like family protein |
Publications ? help Back to Top | |||
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