PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AS_D6ABA1D79.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 262aa MW: 28762.7 Da PI: 8.5942 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.1 | 2.1e-27 | 46 | 95 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqvtfskRr g+lKKA+EL vLCdaeva+i+fs++g+lyey+s Traes_6AS_D6ABA1D79.1 46 RIEDATSRQVTFSKRRSGLLKKAFELGVLCDAEVALIVFSPRGRLYEYAS 95 8***********************************************86 PP | |||||||
2 | K-box | 73.2 | 7.7e-25 | 119 | 212 | 6 | 99 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 ++++ +a + ++ e++ Lk +i+ ++ qR+l Ge+L+s+s eLq+Le qLeksl+ iR+kK++ +l++i el++ke++l en Traes_6AS_D6ABA1D79.1 119 TVEQPAAGVQMCRSEATALKHKIDAIEAYQRKLSGEGLGSCSAHELQELELQLEKSLSCIRQKKQQKMLDKILELKEKERKLLTENSV 206 444677888999**************************************************************************** PP K-box 94 Lrkkle 99 Lrk+++ Traes_6AS_D6ABA1D79.1 207 LRKEYK 212 **9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.1E-34 | 37 | 96 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.128 | 37 | 97 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.72E-29 | 39 | 112 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-28 | 39 | 59 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.24E-36 | 43 | 112 | No hit | No description |
Pfam | PF00319 | 2.6E-25 | 46 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-28 | 59 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-28 | 74 | 95 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.928 | 127 | 217 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.4E-24 | 128 | 211 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MAPSSPPAAA VAAEGDEQQQ QIVVAAAAAA AAKKGGGKRG RREMRRIEDA TSRQVTFSKR 60 RSGLLKKAFE LGVLCDAEVA LIVFSPRGRL YEYASAPDLQ KTIDRYLNHT KGTSTNEKTV 120 EQPAAGVQMC RSEATALKHK IDAIEAYQRK LSGEGLGSCS AHELQELELQ LEKSLSCIRQ 180 KKQQKMLDKI LELKEKERKL LTENSVLRKE YKALPLLELA TAAAAERSPD GAGAEEAEED 240 ERRRHYMEVE TELVIGRPGS SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 4e-18 | 39 | 121 | 2 | 85 | Myocyte-specific enhancer factor 2A |
3kov_B | 4e-18 | 39 | 121 | 2 | 85 | Myocyte-specific enhancer factor 2A |
3kov_I | 4e-18 | 39 | 121 | 2 | 85 | Myocyte-specific enhancer factor 2A |
3kov_J | 4e-18 | 39 | 121 | 2 | 85 | Myocyte-specific enhancer factor 2A |
3p57_A | 4e-18 | 39 | 121 | 2 | 85 | Myocyte-specific enhancer factor 2A |
3p57_B | 4e-18 | 39 | 121 | 2 | 85 | Myocyte-specific enhancer factor 2A |
3p57_C | 4e-18 | 39 | 121 | 2 | 85 | Myocyte-specific enhancer factor 2A |
3p57_D | 4e-18 | 39 | 121 | 2 | 85 | Myocyte-specific enhancer factor 2A |
3p57_I | 4e-18 | 39 | 121 | 2 | 85 | Myocyte-specific enhancer factor 2A |
3p57_J | 4e-18 | 39 | 121 | 2 | 85 | Myocyte-specific enhancer factor 2A |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ512340 | 0.0 | DQ512340.1 Triticum aestivum MADS-box transcription factor TaAGL23 (AGL23) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153307.1 | 1e-127 | MADS-box protein SOC1-like | ||||
Swissprot | A2Z9Q7 | 8e-64 | MAD56_ORYSI; MADS-box transcription factor 56 | ||||
TrEMBL | A0A3B6NIM7 | 0.0 | A0A3B6NIM7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6AS_D6ABA1D79.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1413 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 4e-47 | AGAMOUS-like 20 |
Publications ? help Back to Top | |||
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