PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AS_A9D28899F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 104aa MW: 11650.4 Da PI: 12.0408 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 6e-20 | 12 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++G+r+++ +g+W+AeIrdps+ +r++lg+f +aeeAa+a++ +++++g Traes_6AS_A9D28899F.1 12 SQFRGIRQRP-WGKWAAEIRDPSK---GARVWLGTFNSAEEAARAYDVEARRIRG 62 789*******.**********965...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.08E-29 | 12 | 70 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-23 | 12 | 71 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.393 | 13 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 13 | 71 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-12 | 13 | 62 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-35 | 13 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-11 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-11 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
FDGPSAKRKR KSQFRGIRQR PWGKWAAEIR DPSKGARVWL GTFNSAEEAA RAYDVEARRI 60 RGNKAKVNFP KEPIVPQKRR ARPGAPKAPK LSVASEPSVM PSVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-23 | 13 | 70 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-23 | 13 | 70 | 5 | 63 | ATERF1 |
3gcc_A | 6e-23 | 13 | 70 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ711058 | 1e-103 | FJ711058.1 Dasypyrum villosum putative ethylene responsive element binding protein (EREBP) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195166.1 | 3e-62 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-45 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A3B6NLA1 | 3e-65 | A0A3B6NLA1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6U800 | 5e-66 | A0A3B6U800_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6AS_A9D28899F.1 | 3e-67 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 4e-34 | ERF family protein |