PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AS_A92DEAA15.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Whirly | ||||||||
Protein Properties | Length: 231aa MW: 25310.8 Da PI: 10.199 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 183.4 | 4.3e-57 | 54 | 191 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGk 89 v+k+kaal++ +++p f++++sg +++r+G+++l++ +a+++rkyd+ kkq fals+tev++l++l++ esceffhdp++k+s+eG+ Traes_6AS_A92DEAA15.1 54 VFKGKAALSISPILPLFTKVESGGSRVDRNGSVMLTFFPAVGQRKYDYTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQ 141 9*************************************************************************************** PP Whirly 90 vrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 v+k+l++ Pl G+fvn++v n+++k+ne++svPv+kaefav+r++l+ Traes_6AS_A92DEAA15.1 142 VKKSLSITPLGSDNGYFVNITVLNNVQKTNERLSVPVTKAEFAVMRTALS 191 ***********999*********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 5.9E-73 | 41 | 211 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.18E-69 | 47 | 231 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 8.9E-58 | 54 | 188 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MLRLSRFLPS TSRGVTDLKD VLWSGSLTFK HALSTSAANV DENASVKKYA SYTVFKGKAA 60 LSISPILPLF TKVESGGSRV DRNGSVMLTF FPAVGQRKYD YTKKQLFALS PTEVGSLISL 120 GPAESCEFFH DPSMKSSHEG QVKKSLSITP LGSDNGYFVN ITVLNNVQKT NERLSVPVTK 180 AEFAVMRTAL SFALPHIMGW DQALSTHPQS TSTSASKPRF ERPNPASEWD R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 2e-73 | 49 | 207 | 12 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 2e-73 | 49 | 207 | 12 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 2e-73 | 49 | 207 | 12 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 2e-73 | 49 | 207 | 12 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249976 | 0.0 | AK249976.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf60h16, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180430.1 | 1e-170 | single-stranded DNA-bindig protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 5e-75 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A3B6NMF5 | 1e-169 | A0A3B6NMF5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446V844 | 1e-169 | A0A446V844_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AS_A92DEAA15.1 | 1e-170 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3012 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 2e-75 | WHIRLY 2 |
Publications ? help Back to Top | |||
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