PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_9AA76345D.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26165.8 Da    PI: 9.112
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_9AA76345D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.21.1e-231060151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           kri++ + rqv +skRr gi+KKA EL vLCda+vav+++sstgk + ++s
  Traes_6AS_9AA76345D.1 10 KRIQDATGRQVCYSKRRSGIMKKARELAVLCDAQVAVVVLSSTGKHHHFCS 60
                           79*********************************************9986 PP

2K-box86.26.9e-2972169198
                  K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                            yq+++g+sl+++++e++q+ l++Lk+ ++nL++e+R+++GedL+ L++ eL+ Leq ++ +l+ +R++K++++++q+e+ ++k k  q
  Traes_6AS_9AA76345D.1  72 YQQATGTSLWTEQYEEMQRTLSRLKDINRNLRTEIRQRMGEDLDALEFGELRGLEQSVDAALEVVRQRKYQVITRQTETYKRKVKHSQ 159
                            89999*********************************************************************************** PP

                  K-box  89 eenkaLrkkl 98 
                            +  k+L+++l
  Traes_6AS_9AA76345D.1 160 KVYKSLQQEL 169
                            ******9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-30161IPR002100Transcription factor, MADS-box
CDDcd002651.36E-34281No hitNo description
PRINTSPR004042.8E-21424IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.203562IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-31596IPR002100Transcription factor, MADS-box
PfamPF003191.2E-211158IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-212439IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-213960IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.90.226.107.3E-44196IPR029045ClpP/crotonase-like domain
PfamPF014869.1E-2183169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.54785175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRLGKFEIK RIQDATGRQV CYSKRRSGIM KKARELAVLC DAQVAVVVLS STGKHHHFCS  60
DGADIKGILN RYQQATGTSL WTEQYEEMQR TLSRLKDINR NLRTEIRQRM GEDLDALEFG  120
ELRGLEQSVD AALEVVRQRK YQVITRQTET YKRKVKHSQK VYKSLQQELG FMDNPAFGFM  180
DNPMMGGWDG VAAVEMGGGG SEADMYAFHA VSSQLDLHGM AYRRSDCPLF G
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5028790.0AM502879.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM13 (WM13 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148658.11e-156MADS-box transcription factor 16-like
SwissprotQ944S91e-104MAD16_ORYSJ; MADS-box transcription factor 16
TrEMBLA0A446V8741e-172A0A446V874_TRITD; Uncharacterized protein
STRINGTraes_6AS_9AA76345D.11e-173(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57283552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.19e-55MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chen ZX, et al.
    Morphogenesis and molecular basis on naked seed rice, a novel homeotic mutation of OsMADS1 regulating transcript level of AP3 homologue in rice.
    Planta, 2006. 223(5): p. 882-90
    [PMID:16254725]
  3. Zhang Q, et al.
    Morphological, anatomical and genetic analysis for a rice mutant with abnormal hull.
    J Genet Genomics, 2007. 34(6): p. 519-26
    [PMID:17601611]
  4. Yoshida H, et al.
    superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice.
    Plant Biotechnol. J., 2007. 5(6): p. 835-46
    [PMID:17764519]
  5. Yao SG,Ohmori S,Kimizu M,Yoshida H
    Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development.
    Plant Cell Physiol., 2008. 49(5): p. 853-7
    [PMID:18378529]
  6. Xiao H, et al.
    STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice.
    Plant J., 2009. 59(5): p. 789-801
    [PMID:19453444]
  7. Seok HY, et al.
    Rice ternary MADS protein complexes containing class B MADS heterodimer.
    Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604
    [PMID:20888318]
  8. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]
  9. Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T
    Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58.
    Plant Sci., 2012. 183: p. 183-9
    [PMID:22195592]
  10. Ohmori S,Tabuchi H,Yatou O,Yoshida H
    Agronomic traits and gene containment capability of cleistogamous rice lines with the superwoman1-cleistogamy mutation.
    Breed. Sci., 2012. 62(2): p. 124-32
    [PMID:23136523]
  11. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  12. Yun D, et al.
    OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice.
    Mol Plant, 2013. 6(3): p. 743-56
    [PMID:23300256]
  13. Lombardo F, et al.
    The superwoman1-cleistogamy2 mutant is a novel resource for gene containment in rice.
    Plant Biotechnol. J., 2017. 15(1): p. 97-106
    [PMID:27336225]