PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AS_967D58FB4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 1135aa MW: 126076 Da PI: 6.3236 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.3 | 2.6e-22 | 132 | 233 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F Traes_6AS_967D58FB4.1 132 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIF 218 99******************************9999986.************************************************ PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++++++l+++++r+ Traes_6AS_967D58FB4.1 219 V--RDEKQQLLLGIRRA 233 *..5688889****997 PP | |||||||
2 | Auxin_resp | 114.9 | 7.4e-38 | 258 | 341 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ ete+ +rr++Gt++g+sdldpvrW+nS+WrsL+ Traes_6AS_967D58FB4.1 258 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCETEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 341 799********************************989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-41 | 121 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-39 | 124 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.32E-18 | 131 | 223 | No hit | No description |
PROSITE profile | PS50863 | 11.448 | 132 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-20 | 132 | 233 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-21 | 132 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.0E-33 | 258 | 341 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.3E-8 | 999 | 1087 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.947 | 1002 | 1086 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.84E-6 | 1016 | 1081 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1135 aa Download sequence Send to blast |
MAQSPASSAV AASAPCEGER KAPAINGELW HACAGPLVSL PPVGSLVVYF PQGHSEQVAA 60 SMQKDVEAHV PSYPNLPSKL ICLLHSVTLQ ADPDTDEVYA QMTLQPVNTY AKEALQLSEL 120 ALRQARPQME FFCKTLTASD TSTHGGFSVP RRAAEKIFPS LDFSLQPPCQ ELQARDIHDN 180 VWTFRHIFRG QPKRHLLTTG WSLFVSGKKL FAGDSVIFVR DEKQQLLLGI RRANRQPTNI 240 SSSVLSSDSM HIGVLAAAAH ASANTSPFTI FYNPRASPTE FVIPFAKYQK AMYSNQISLG 300 MRFRMMCETE ELGTRRYMGT ITGISDLDPV RWKNSQWRSL QVGWDESAAG ERRNRVSIWE 360 IEPLAAPFFI CPQPFFGVKR PRQLDDESLE MESLMKRAMP WLGEEVCIKD PQTQSATMPG 420 LSLVQWMNMN RQQSSSLAST AMQSEYLRSA SNPAMQNIGA ADLARQLYMQ NHLLQQNSMQ 480 FNPPKLHQQM KPINDLSNAA LPLNQLSAIR NHQDQKQDQQ RQQQSSIQAI PLSQAQAQTN 540 IVQAQVILQN QMQQQQQQKQ PPPSPTQNQH GASGQHLLQS HQLQDQNLQM QQQQLLLHQQ 600 LQQQQQQQQL NKLPGQLANL ASQQTQLSDQ ELHLQLLQKL QQQSLMSQSA VTLSRLPIIQ 660 EQQNFLVDMQ QQLSNSHSLA QQQVMPQQDC RTSSLQTTQL PPPIQQEQQQ QQQQKPSQKQ 720 VAPTYVSEAA FAQISSTSVI PKTGNATIVP GAAQSAVTEE IPSCSTSPST ANGNHLAQPT 780 IGRNDHCKTS TEKVPHSIAQ MSILIPIEAV SVTPVTTKEL PKLNNGVKSS AITSKLPNVV 840 SGLQNFMNNA LPTDNLETAS SATSLWPSQT DGLLHQGFAT SNFNQHQMFK DELPDVEIQG 900 VDPSNSALFG MNNDGPLGFP METEGLLENA LDSVKYQNHF STDDENNYQM QKDARQEIST 960 SMVSQSFGQS DMAFNSIDSA INDGALMNRS SWPPAAPPQR MRTFTKVYKR GAVGRSIDIG 1020 RFSGYGELNQ ALARMFGIEG QLEDRQRIGW KLVYTDHEDD VLLLGDDPWE EFVNCVKCIR 1080 ILSPQEVQKM SLDGDLGSNV LPNQACSSSD GGNTWKPRYE QNSGNPSIGP YDQFE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-163 | 18 | 362 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155071.1 | 0.0 | auxin response factor 5-like isoform X1 | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A3B6NMM8 | 0.0 | A0A3B6NMM8_WHEAT; Auxin response factor | ||||
STRING | Traes_6AS_967D58FB4.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1409 | 35 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Publications ? help Back to Top | |||
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