PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_93815D497.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 286aa    MW: 30254.1 Da    PI: 10.1607
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_93815D497.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-175194146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                           r ++T+eEd  +++a+++lG++ W++Iar ++ gRt++ +k++w++
  Traes_6AS_93815D497.1 51 RRPFTAEEDAAILRAHARLGNR-WAAIARLLP-GRTDNAVKNHWNS 94
                           679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.1146100IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2149100IPR009057Homeodomain-like
SMARTSM007174.6E-165098IPR001005SANT/Myb domain
PfamPF002493.4E-155194IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-1451100IPR009057Homeodomain-like
CDDcd001676.19E-135396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
RVRGAPRRTR RCGGWWSGTG RGTGPRSGGG SPGXXXXXXX XXXXXXXXVE RRPFTAEEDA  60
AILRAHARLG NRWAAIARLL PGRTDNAVKN HWNSSLKRKL ATATGGGAAW EEASDSGDSP  120
RPCKRASPGP ESPTGSDRSE LSHGSGQVFR PVPRPGGFDA ISADVRPPPP RQDEDPITSL  180
SLSLPGLEHG FHHDSARSHF QELSPSPRSP SPPPAPAPQP SSSYPFSGDL VAAMQEMIRA  240
EVCKYMSGVG LPAGCGAGAV GEACIPQLVE GVMRAAAERV GVMTRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mbj_A6e-1949100152MYB PROTO-ONCOGENE PROTEIN
1mbk_A6e-1949100152MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3538580.0DQ353858.1 Triticum aestivum MYB transcription factor TaMYB1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180953.11e-145transcription factor MYB44-like
TrEMBLA0A446VBE51e-162A0A446VBE5_TRITD; Uncharacterized protein
STRINGTraes_6AS_93815D497.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.14e-31myb domain protein r1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]