PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_90DEDA6E3.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 480aa    MW: 51116.3 Da    PI: 6.2353
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_90DEDA6E3.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.54.9e-27249296552
                 RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            +sl++l+ yFs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki+++
  Traes_6AS_90DEDA6E3.2 249 VSLKELQGYFSGSLKDAARSLGVCPTTMKRICRQHGISRWPFRKISKV 296
                            799******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.79232318IPR003035RWP-RK domain
PfamPF020426.6E-25249296IPR003035RWP-RK domain
SuperFamilySSF542774.25E-18369441No hitNo description
SMARTSM006661.2E-18374468IPR000270PB1 domain
PROSITE profilePS5174514.969374468IPR000270PB1 domain
PfamPF005641.8E-11375444IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.4E-22375441No hitNo description
CDDcd064071.58E-32375445No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MLEVSGLLAA VRQAHELPLA QAWVRCKQCT STDVDDDGQH FSLTTAGAPF HLGAHYGGFR  60
DACAEHHLRR GQGLVGEAAA VRGPRFCADV ARRSKDAYPL AHYARMHGLA GCLAVPLRLP  120
QSAMDVGDDG QVGEECVVLE FFLPPDCRSA GEQKAMVDAV AATIRKECSG DHLEATSDLQ  180
DLSLENVLAD ADTAHELNDR GDYDTNDSDE EDGDQAGGVH GADQSGAEDR GPPPETKKKK  240
IGRKAGRPVS LKELQGYFSG SLKDAARSLG VCPTTMKRIC RQHGISRWPF RKISKVNRAL  300
GKIRAIESVD CSPKPTAASS STSRRAPAPH LPCLSSALGE DTSSQGSSQD PPPLTKTTMR  360
KSLLWRSNGA EGELVTIKAN YRGDIIRFRV PCSAGVAAVK EEVAKRLGLD AGAFDIKYLD  420
DNHEWVVLSC DADFQECLDV APGLPASAAV AAGAGAVSPV VRLMVQEVAD NHRSSCGSSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3643140.0AK364314.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023L01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153726.10.0protein NLP3-like isoform X2
TrEMBLA0A3B6NMA90.0A0A3B6NMA9_WHEAT; Uncharacterized protein
STRINGTraes_6AS_90DEDA6E3.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62692939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.11e-60Nin-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]