PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AS_7C1FD879C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 355aa MW: 38081.2 Da PI: 7.826 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.9e-16 | 62 | 109 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d++ ++G g+W++++++ g+ R +k+c++rw +yl Traes_6AS_7C1FD879C.1 62 KGLWSPEEDQRLRDYILKHGLGCWSAVPAKAGLQRNGKSCRLRWINYL 109 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.8e-16 | 115 | 160 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++ +++ ++lG++ W+ Ia +++ gRt++++k++w++yl Traes_6AS_7C1FD879C.1 115 RGMFSQEEEDVVINLQAKLGNK-WSQIAMHLP-GRTDNEVKNYWNSYL 160 788*******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.46 | 57 | 109 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.54E-29 | 59 | 156 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 61 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-14 | 62 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-22 | 63 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.66E-10 | 65 | 109 | No hit | No description |
PROSITE profile | PS51294 | 25.295 | 110 | 164 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-14 | 114 | 162 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-14 | 115 | 160 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-25 | 117 | 164 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.25E-12 | 118 | 160 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MEPGGRSPSA ATTSAAATAH ILVLWDRRGG ESLGGISEEG EGRRHRSMGC RSCDKPKMNY 60 RKGLWSPEED QRLRDYILKH GLGCWSAVPA KAGLQRNGKS CRLRWINYLR PGLKRGMFSQ 120 EEEDVVINLQ AKLGNKWSQI AMHLPGRTDN EVKNYWNSYL KKRVMQLGSN SSSNPASKNA 180 SPELLTSMSA TTELIMTSGG GGGGGSTATS THDHDANISS SGAISAAEPF VDQHEHQHHH 240 QQQAKNFVFA DWMPTAAVTP AGPESYSMSA HWPASTASSG NVTPSHGAFV GDQMSGSSYA 300 ALQHPHQHHH HQSAVTVAGA HASAGGMVAG GGYFDLLNMG DIYGGFSTTN DDLLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-25 | 62 | 164 | 7 | 108 | B-MYB |
1gv2_A | 7e-25 | 62 | 164 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 1e-24 | 56 | 164 | 23 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 7e-25 | 62 | 164 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 7e-25 | 62 | 164 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368664 | 0.0 | AK368664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077L03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177025.1 | 0.0 | transcription factor MYB6-like | ||||
TrEMBL | A0A3B6NK95 | 0.0 | A0A3B6NK95_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6AS_7C1FD879C.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12296 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 2e-53 | myb domain protein 86 |
Publications ? help Back to Top | |||
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