PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_7B3C53009.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family BES1
Protein Properties Length: 585aa    MW: 65575.9 Da    PI: 5.0622
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_7B3C53009.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822106.16.1e-33111629134
                 DUF822  29 iyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq.sslkssalaspvesysas 113
                            ++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+  + +p     a+  g+++ +s e+++  +sl+s+a+ +p++s+++ 
  Traes_6AS_7B3C53009.2   1 MLAGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFLSSPQPSlpPPAQFQGAFQATSLETPVFtNSLNSYAIGTPIDSQASA 88 
                            79********************************************99988999***************99***************** PP

                 DUF822 114 pksssfpspssldsislasa.......a 134
                            +++++++spsslds+ +a++        
  Traes_6AS_7B3C53009.2  89 LQTDDSLSPSSLDSVVVAEQsiknesyG 116
                            *****************98855443332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.2E-321126IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.62E-165143581IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.9E-172145581IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.7E-81168540IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-53183197IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-53204222IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-53226247IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-53319341IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-53392411IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-53426442IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-53443454IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-53461484IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-53499521IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MLAGLRQHGN FPLPARADMN DVLAALARAA GWTVHPDGTT FLSSPQPSLP PPAQFQGAFQ  60
ATSLETPVFT NSLNSYAIGT PIDSQASALQ TDDSLSPSSL DSVVVAEQSI KNESYGNSSS  120
ANSLNCMGSD QLLRASAVWA GDFTKTPYIP VYASLSMGII NCYCQLVDPE AVRAELRHLK  180
SLNVDGVVVD CWWGIVEAWT PQKYEWSGYR DLFGIIKEFK LKVQVVLSFH GSGECGSGGV  240
LIALPRWVIE IAQENQDIFF TDREGRRNTE CLSWGIDKER VLRGRTGIEV YFDFMRSFHM  300
EFRSLSEEGL ISAIEVGLGA SGELRYPSCP EKMGWRYPGI GEFQCYDRYM QKNLRQSALT  360
RGHLFWARGP DNAGYYNSRS HETGFFCDGG DYDSYYGRFF LNWYSGILID HVDQVLSLAT  420
LAFDGAAIVV KIPSIYWWYR TASHAAELTA GFYNPTNRDG YSPVFRMLKK HSIILKVVCY  480
GPEFTVQEND EAFADPEGLT WQVMNAAWDH GLSVSVESAL PCLDVDMYSR ILDTAKPRND  540
PDRHHLSFFA YRQRTPFLLQ RDVCFSELET FVKCMHGEAT QNFVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12314857811444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN1793990.0FN179399.1 Hordeum vulgare subsp. vulgare partial mRNA for beta-amylase (BAM7 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149126.10.0beta-amylase 8-like isoform X1
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A3B6NKW30.0A0A3B6NKW3_WHEAT; Beta-amylase
STRINGTraes_6AS_7B3C53009.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]