PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6AS_74635BB63.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 140aa MW: 15116.2 Da PI: 4.506

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6AS_74635BB63.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	91.8	1e-28	2	140	128	265
GRAS 128 LlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vakrledleleeLrvkpgEalaVnlvlq 209 Llqa+ +R+ gpp++RiTg g+ + + l +tg+rL+ fA++l++pf+f++l + +l++ L+++p+E+laVn+vl Traes_6AS_74635BB63.1 2 LLQAIGDRAdaaVGPPEVRITGAGP----DLDVLLRTGDRLRAFASSLNLPFRFHPLllpCTAQLAADPAACLELHPDETLAVNCVLF 85 9*****988889*******....9***********************665555666677889************ PP GRAS 210 lhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyys 265 lhrl +++l +++L+ v+s++P vv+++e+e + +++ ++ +r++ a+++ys Traes_6AS_74635BB63.1 86 LHRLS-GDGEL----TAFLRWVRSMNPAVVTIAEREGEAGRGedddELPRRVAAAMDFYS 140 7.44555....55***************8775443455999**9999996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	20.868	1	140	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.6E-26	2	140	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010223	Biological Process	secondary shoot formation

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
PLLQAIGDRA DAAVGPPEVR ITGAGPDLDV LLRTGDRLRA FASSLNLPFR FHPLLLPCTA 60 QLAADPAACL ELHPDETLAV NCVLFLHRLS GDGELTAFLR WVRSMNPAVV TIAEREGEAG 120 RGEDDDELPR RVAAAMDFYS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269\|PubMed:12687001}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF710617	0.0	JF710617.1 Hordeum vulgare lateral suppressor 2 (LAS2) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196668.1	6e-89	protein MONOCULM 1-like
Swissprot	Q84MM9	2e-50	MOC_ORYSJ; Protein MONOCULM 1
TrEMBL	A0A3B6NNN9	8e-92	A0A3B6NNN9_WHEAT; Uncharacterized protein
STRING	Traes_6AS_74635BB63.1	2e-95	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	2e-16	GRAS family protein

Publications ? help Back to Top
Li X, et al. Control of tillering in rice. Nature, 2003. 422(6932): p. 618-21 [PMID:12687001] Sun F, et al. Identification and functional analysis of the MOC1 interacting protein 1. J Genet Genomics, 2010. 37(1): p. 69-77 [PMID:20171579] Sanyal A, et al. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Mol. Biol. Evol., 2010. 27(11): p. 2487-506 [PMID:20522726] Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Xu C, et al. Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering. Nat Commun, 2012. 3: p. 750 [PMID:22434193] Lin Q, et al. Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1. Nat Commun, 2012. 3: p. 752 [PMID:22434195] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Liang WH,Shang F,Lin QT,Lou C,Zhang J Tillering and panicle branching genes in rice. Gene, 2014. 537(1): p. 1-5 [PMID:24345551] Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]