PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_70AD4B0D5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 304aa    MW: 31521.4 Da    PI: 9.9513
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_70AD4B0D5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07100125227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            kt+lC+ +     Ck Gd+C+FaHg+
  Traes_6AS_70AD4B0D5.1 100 KTKLCNKYNTAEGCKWGDKCHFAHGE 125
                            8***********************96 PP
2zf-CCCH35.61.5e-11270295127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +kt+lC++f + G C +GdrC+FaHg+
  Traes_6AS_70AD4B0D5.1 270 FKTKLCDNFTK-GSCTFGDRCHFAHGE 295
                            69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.43259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0333260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-53358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-63457IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-1395128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-897129IPR000571Zinc finger, CCCH-type
SMARTSM003560.06398125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.21698126IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-5100125IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.5E-13160239IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-14167237IPR004088K Homology domain, type 1
SMARTSM003221.0E-8168238IPR004087K Homology domain
PROSITE profilePS5008414.571169233IPR004088K Homology domain, type 1
CDDcd001059.34E-13171233No hitNo description
PfamPF000131.0E-10171235IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.5E-16267300IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-8269295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.821269296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-9269299IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9270295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEGGGRKRGT ADGAAVGGKR TRESESFQTG VGSKSKPCTK FFSTAGCPFG EGCHFLHYFP  60
GGHQAVAKMS NLGGQAFAHP QGRMPSGSAV PDGHPTPTVK TKLCNKYNTA EGCKWGDKCH  120
FAHGERELGK QTFINNSMPP HMGPRPTGHF GPPAMPSPGM ATPAGFGASS TAKVSVDASL  180
AGAIIGRGGV NTKQISRVTG AKLAIRDHES NEALKNIELE GTFDQINNAS AMLRELIFRI  240
SGGANAPPPG VIPAGGSHRG GGGSGQGSNF KTKLCDNFTK GSCTFGDRCH FAHGENELRK  300
SAAV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164455.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-162C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A3B6NNP30.0A0A3B6NNP3_WHEAT; Uncharacterized protein
TrEMBLA0A446VAY70.0A0A446VAY7_TRITD; Uncharacterized protein
STRINGTraes_6AS_70AD4B0D5.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-55C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]