PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_6F89CC969.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 408aa    MW: 43542.9 Da    PI: 9.5018
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_6F89CC969.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1683.2e-52361681128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+
  Traes_6AS_6F89CC969.1  36 LPPGFRFHPTDEELVVHYLKKKAAKVPLPV-TIIAEVDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGT 122
                            79****************************.89***************988899********************************** PP

                    NAM  89 dkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk++l++       +e+ g+kk Lvfy+g+ pkg kt+W+mheyrl
  Traes_6AS_6F89CC969.1 123 DKPILASgtgcglVREKLGVKKALVFYRGKPPKGLKTNWIMHEYRL 168
                            ******98777776677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-6133207IPR003441NAC domain
PROSITE profilePS5100559.87336207IPR003441NAC domain
PfamPF023652.3E-2737168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MRSMGSSDSS SGSAQKAARH QHEPPPPRQR GSAPELPPGF RFHPTDEELV VHYLKKKAAK  60
VPLPVTIIAE VDLYKFDPWE LPEKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT  120
GTDKPILASG TGCGLVREKL GVKKALVFYR GKPPKGLKTN WIMHEYRLTD ASGSTTTSRP  180
PPPVTGGSRA AASLRLDDWV LCRIYKKINK AAAGDQQRST ECEDSVEDAV TAYPLYATAG  240
MAGAGAHGSN YASPSLLHHQ DSHFLEGLFT ADDAGLSAGA TSLSHLAAAA RASPAPTKQF  300
LAPSSSTPFN WLDASPAGIL PQARNFPGFN RSRNVGNMSL SSTADMAGAA GNAVNAMSAF  360
MNPLPVQDGT YHQHHVILGA PLAPEATTGG ATSGFQHPVQ VSGVNWNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-72282105171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321). {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8208860.0KM820886.1 Triticum aestivum cultivar Chinese Spring NAC transcription factor NAM-A1 (NAM-A1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187501.10.0NAC transcription factor NAM-A1
SwissprotA0SPJ30.0NAMA1_TRITD; NAC transcription factor NAM-A1
TrEMBLA0A3B6NLQ40.0A0A3B6NLQ4_WHEAT; Uncharacterized protein
TrEMBLA0A446V6J90.0A0A446V6J9_TRITD; Uncharacterized protein
STRINGTraes_6AS_6F89CC969.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75723649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-87NAC domain containing protein 25
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]