PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_66A98BA55.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 340aa    MW: 37290.9 Da    PI: 9.4948
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_66A98BA55.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13186229755
                            HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            e+Er+RR+++N+++ +Lr+l+P+      +K++ a+iL  A++YI  Lq
  Traes_6AS_66A98BA55.1 186 EAERKRRRKLNDRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 229
                            89*********************7.....7***************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.94E-15176240No hitNo description
SuperFamilySSF474595.37E-18178243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-16185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-11186229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16186240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
SRATRLPPAA ARRRGSSSPS PAGSSSSSRR DIWSRSSRWR SWSWRSAVAV GRGGRRRRRR  60
GSRGTRRRRQ TRGGSTRRRR STCSTAPGEA APXXXXGEPF LAGVQDDGAA GVGWQYAAES  120
SEPPSTVAQE HQQLHGSGVG RADSGSEGSD MQLGDPDDDG NGETQRGSGK DGKDAEGKRQ  180
QCKNLEAERK RRRKLNDRLY KLRSLVPNIT KMDRASILGD AIDYIVGLQK QVKDLQDELE  240
DPNPPGGTGG DSKAPDVLLD DHPPPGLDND EDSPQQHPFP SAGGKRARKE EAGEEEEKEA  300
EDQDMEPQVE VRQVEGKEFF LQVLCSHKSG RFVRIMDEIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-12177238263Transcription factor MYC2
5gnj_B2e-12177238263Transcription factor MYC2
5gnj_E2e-12177238263Transcription factor MYC2
5gnj_F2e-12177238263Transcription factor MYC2
5gnj_G2e-12177238263Transcription factor MYC2
5gnj_I2e-12177238263Transcription factor MYC2
5gnj_M2e-12177238263Transcription factor MYC2
5gnj_N2e-12177238263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15159RGGRRRRRR
25462RRRRRRGSR
35469RRRRRRGSRGTRRRRQ
46579RRRRQTRGGSTRRRR
5187194ERKRRRKL
6188192RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3750740.0AK375074.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084O15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177848.11e-147transcription factor TDR-like
SwissprotQ6YUS39e-61TDR_ORYSJ; Transcription factor TDR
TrEMBLA0A3B6NKG41e-168A0A3B6NKG4_WHEAT; Uncharacterized protein
TrEMBLA0A446V3Z81e-168A0A446V3Z8_TRITD; Uncharacterized protein
STRINGTraes_6AS_66A98BA55.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-35bHLH family protein
Publications ? help Back to Top
  1. Endo M, et al.
    High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development.
    Plant Cell Physiol., 2009. 50(11): p. 1911-22
    [PMID:19808807]
  2. Xu J,Wu M,He C
    [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae].
    Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61
    [PMID:20387456]
  3. Liu Z,Bao W,Liang W,Yin J,Zhang D
    Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development.
    J Integr Plant Biol, 2010. 52(7): p. 670-8
    [PMID:20590996]
  4. Zhang D, et al.
    OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice.
    Plant Physiol., 2010. 154(1): p. 149-62
    [PMID:20610705]
  5. Senapati PK,Behera S
    Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock.
    Bioresour. Technol., 2012. 117: p. 99-106
    [PMID:22613886]
  6. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  7. Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH
    [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content].
    Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7
    [PMID:23285852]
  8. Li L, et al.
    An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.
    Planta, 2015. 241(1): p. 157-66
    [PMID:25236969]
  9. Yi J, et al.
    Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.
    Plant Physiol., 2016. 170(3): p. 1611-23
    [PMID:26697896]