PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AS_5562B97F7.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 404aa MW: 43687.4 Da PI: 6.1943 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 30 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+llv+ v+++G g+W+++ r+ g+ R++k+c++rw ++l Traes_6AS_5562B97F7.1 30 KGPWTPDEDQLLVEHVRRHGEGSWNAVRRETGLLRCGKSCRLRWANHL 77 79******************************99**********9986 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 83 | 126 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE+ l+++++++ G++ W++I+++++ gRt++++k++w++ Traes_6AS_5562B97F7.1 83 RGPFSPEEERLILRLHALIGNK-WARISAHLP-GRTDNEIKNYWNT 126 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.951 | 25 | 77 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.36E-31 | 27 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-14 | 29 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-16 | 30 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-22 | 31 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.62E-12 | 32 | 77 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 45 | 54 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 26.724 | 78 | 132 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-17 | 82 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 83 | 126 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-26 | 85 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.58E-12 | 85 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MAVEAPQQPE QAAGGSVEQG AAAGGGRLKK GPWTPDEDQL LVEHVRRHGE GSWNAVRRET 60 GLLRCGKSCR LRWANHLRPN LKRGPFSPEE ERLILRLHAL IGNKWARISA HLPGRTDNEI 120 KNYWNTRLKR RKRAGLALYP PDVEREVALV RAGKLRPIVD ADGNASSLQA PLLLDAAADQ 180 FAWPAAPPFH PAFNNVAPPQ PFQFTGNISH NPQALLAAQV PYLHHDEVSA GLGHANKLYA 240 DALGMPPLVP PSAQELPSNQ SPADAGGPLE MLVLEQDQRL PGAALLRVTS MPELVYNEND 300 YSAWPSGLSG GSGSRSEGDV TSHYGGKCDC FFGADGVKPA KGMPASLAVA EEEVSGLFGG 360 EELVAVWPDK PPESITKDDF NLQMMEMQHL MPPVPLPADE HGLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-30 | 28 | 131 | 5 | 107 | B-MYB |
1h8a_C | 1e-29 | 28 | 131 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373108 | 0.0 | AK373108.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3021G02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171960.1 | 0.0 | transcription factor MYB104-like | ||||
TrEMBL | A0A446V8L3 | 0.0 | A0A446V8L3_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AS_5562B97F7.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12397 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 7e-52 | myb domain protein 101 |
Publications ? help Back to Top | |||
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