PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_4D5775944.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 550aa    MW: 58998.3 Da    PI: 8.492
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_4D5775944.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-10382424552
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                            h + ErrRR+r+N++fe Lr llP+       K +Ka++L  + +Y++
  Traes_6AS_4D5775944.1 382 HMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLANTLDYMN 424
                            8899********************95.....599************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.237377426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-16379450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-14381445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-8382424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-11383432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-4392426No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MMDTLFVLGQ ESRLRILQQA ASRVPACAYL CVWAPIPAGG HRPTPPFTAA NRARRQLLCL  60
DAWLRDGGSG DVDRERALFD AYKGSLCAAV SGCVPGWAYE DGRAYMELSE HELAASASSP  120
VQLQFYQEAG IKVAAFMGCE SGEIEVGMST PAGQMNLQAG LGQIFSEDFF QQSLLEELLQ  180
LPPTRPSSSS SSLPSISVDS PADGSTSLLR TMAMSSSTTT SPRDLTAGPL PHPPRPPHPV  240
PFSRHGPAHV HGHVHFPSPE ADDVAMAQAM LAVISASSSS SSAMPNTPTP PLGYRRAHRS  300
PRRGSTTTAF RPYNAALAPR APRRPSDAPG QRMIKMGISI LRRMNTLNNN GQERTTGTTT  360
QRWREEDEEA APPAPTSSQL HHMISERRRR ERLNESFEAL RGLLPPGSKK DKATVLANTL  420
DYMNVLIAQI SELEARNRSL ETAAQIQQHQ RITNGNSRDR PDQAALQAGG SSKRVQVEVA  480
TSSAGASTSS SSFSTGQCRE VTIRVAAAGD LSDLVARVLA LLKDTAGHRF SVVAVDARQP  540
QGTGDGGIAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385390ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3617110.0AK361711.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1146P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155039.10.0putative transcription factor bHLH041
TrEMBLA0A3B6NPN40.0A0A3B6NPN4_WHEAT; Uncharacterized protein
TrEMBLA0A446VCH90.0A0A446VCH9_TRITD; Uncharacterized protein
STRINGTraes_6AS_4D5775944.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-15bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]