PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_4B9F0CBBF.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 332aa    MW: 35990.8 Da    PI: 9.0885
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_4B9F0CBBF.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.33e-32154207255
                G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Traes_6AS_4B9F0CBBF.2 154 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 207
                            9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.4E-15151208IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28152208IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-23154208IPR006447Myb domain, plants
PfamPF002492.0E-7155206IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MELFPRQPDL ALQISTNSSS SSSPPTAPPG SWGRPPDATT GATSMDHFSH HLGFLRATDI  60
TNKDGTPPLA WTPPPSAATA ASYSNHISNH YHHRMNALLK PIRGVPIYHH HPSFQQLQHQ  120
HMAMAYRSSG VGGGGGFLSS RSRFPPGRRS VRAPRMRWTT TLHARFVHAV ELLGGHERAT  180
PKSVLELMDV KDLTLAHVKS HLQMYRTIKS TDKPMTSPGQ NEGFDNGSAG EISDESLPEA  240
LNTHRGTDQN GTSANSHSSS SYNGGLWSNS SSRVGWPGLG TNSTENRGQC HKEADASKSL  300
EMSAEMNVSC ISDQTSSPPV PNLEFTLGRT HH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-16155209458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-16155209458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-16155209357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-16155209357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-16155209357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-16155209357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-16155209458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-16155209458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-16155209458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-16155209458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-16155209458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-16155209458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016685e-51FP101668.1 Phyllostachys edulis cDNA clone: bphyst006o10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157570.10.0probable transcription factor KAN2 isoform X1
SwissprotQ9C6162e-49KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A3B6NIR50.0A0A3B6NIR5_WHEAT; Uncharacterized protein
STRINGTraes_6AS_4B9F0CBBF.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-41G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]