PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_4106E8E28.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 304aa    MW: 32268.7 Da    PI: 5.0515
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_4106E8E28.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.47.4e-17212249136
                   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                            C++Cg ++  Tp++Rrgpdg++tLCnaCGl ++ kg++
  Traes_6AS_4106E8E28.1 212 CQHCGISSnnTPMMRRGPDGPRTLCNACGLAWANKGMM 249
                            *****99889************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009795.9E-882117IPR010399Tify domain
PROSITE profilePS5132013.13682117IPR010399Tify domain
PfamPF062001.9E-1084116IPR010399Tify domain
PfamPF062032.0E-17142184IPR010402CCT domain
PROSITE profilePS5101713.533142184IPR010402CCT domain
SMARTSM004015.3E-12206259IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.52E-11210253No hitNo description
Gene3DG3DSA:3.30.50.104.4E-15211252IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.87E-14211250No hitNo description
PROSITE patternPS003440212239IPR000679Zinc finger, GATA-type
PfamPF003204.0E-14212247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAEVEAAAGA MEQYEPHLEH GEEEEEEEGE EEGEEEGEEG HGYAYDYVTG EAVPMDEEGA  60
AAAAHAHHGA AGPHGMEAGG APQAPSNTLT LSFQGEVFVF ESVSAEKVQA VLLLLGGREL  120
GPGMGVGPSS SASYSKRLNS HRMASLMRFR EKRKERNFDK KIRYSVRKEV AHRMQRHKGQ  180
FTSSKAKAEE AAAAANSDWG AVEGRPLSAP VCQHCGISSN NTPMMRRGPD GPRTLCNACG  240
LAWANKGMMR EVKGHTPLKV VPPATDDAQN GVAEAPTAEQ QHLALEAAPE APVAPAPAAN  300
GHDS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3588960.0AK358896.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1085G16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166796.11e-147GATA transcription factor 17-like isoform X1
SwissprotQ6Z4331e-100GAT17_ORYSJ; GATA transcription factor 17
TrEMBLA0A3B6NM120.0A0A3B6NM12_WHEAT; Uncharacterized protein
TrEMBLA0A446V7K00.0A0A446V7K0_TRITD; Uncharacterized protein
STRINGTraes_6AS_4106E8E28.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-55ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]