PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AS_3E534A2C1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 24538.6 Da PI: 8.6727 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59 | 7.7e-19 | 107 | 161 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t eq Lee F+ ++ +s+ e+ +LA++lgL+ rqV vWFqNrRa+ k Traes_6AS_3E534A2C1.1 107 RKKLRLTVEQAALLEESFRAHNVLSHGEKHDLARQLGLKPRQVEVWFQNRRARTK 161 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 112.8 | 2.1e-36 | 107 | 192 | 1 | 86 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kk+rl+ eq++lLEesF++++ L++ +K++lar+Lgl+prqv+vWFqnrRARtk+kq+E d+e L+r++++l+++n+rL++e +e Traes_6AS_3E534A2C1.1 107 RKKLRLTVEQAALLEESFRAHNVLSHGEKHDLARQLGLKPRQVEVWFQNRRARTKLKQTELDCELLRRWCERLSDDNARLRRELAE 192 69*******************************************************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-18 | 88 | 161 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.18E-18 | 89 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.265 | 103 | 163 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.3E-16 | 105 | 167 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.81E-13 | 107 | 164 | No hit | No description |
Pfam | PF00046 | 3.6E-16 | 107 | 161 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 3.8E-6 | 134 | 143 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 138 | 161 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.8E-6 | 143 | 159 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 2.2E-12 | 163 | 204 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MSSLTTISGG AMEESQEVEE LVDTRLSLVI GAASRPPPTV LALLPAASPE NEAAARGKRK 60 GVKGPENGAG GAAAASREHS KRSKTVHDSS DVDDDDRGDA AGGDGTRKKL RLTVEQAALL 120 EESFRAHNVL SHGEKHDLAR QLGLKPRQVE VWFQNRRART KLKQTELDCE LLRRWCERLS 180 DDNARLRREL AETLSSSPAF LSRLTMANDK AVCSSCNKLT SARMPG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 111 | TRKKLRL |
2 | 155 | 163 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189357.1 | 1e-136 | putative homeobox-leucine zipper protein HOX26 | ||||
Swissprot | Q67UX6 | 5e-44 | HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26 | ||||
TrEMBL | A0A3B6NM33 | 1e-162 | A0A3B6NM33_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446V7H8 | 1e-162 | A0A446V7H8_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AS_3E534A2C1.1 | 1e-162 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8315 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22800.1 | 2e-36 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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