PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AS_39EE7AF68.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 228aa MW: 25081.2 Da PI: 4.8783 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.2 | 9.1e-11 | 50 | 107 | 28 | 90 |
--..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 28 gkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++ ++ ++t+ + + r ++vk+ y+++ ++++ ++GW++F ++n+L g +vvF+ld+ + Traes_6AS_39EE7AF68.3 50 NV--TGEKVTFVS-NQRAYTVKC-YKGRIKSTMYGRGWRKFYEDNNLGKGQMVVFHLDEP-SP 107 33..334566666.6799*****.888888899***********************9874.33 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-9 | 39 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.8E-10 | 41 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.90E-10 | 45 | 104 | No hit | No description |
Pfam | PF02362 | 1.1E-8 | 46 | 105 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAGAADAGVC GVCFNHCKYE SKGSGFSMVA WEEFKNAGVV PCNERAHFNN VTGEKVTFVS 60 NQRAYTVKCY KGRIKSTMYG RGWRKFYEDN NLGKGQMVVF HLDEPSPTAS ILWFQVGNGS 120 EDEQPMEEGD PIEDSDSGNE DGEASSDDGE GIVRTRGLLL NETEDAQLQG LLPLSDGFIG 180 FAFVHRLTRT DIRLGMMKIP KKVAAATLFE EQGVVGISVD GWRFKKIS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184658.1 | 1e-57 | uncharacterized protein LOC109770365 | ||||
TrEMBL | A0A3B6NMN0 | 1e-166 | A0A3B6NMN0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446VBL3 | 1e-166 | A0A446VBL3_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AS_39EE7AF68.3 | 1e-170 | (Triticum aestivum) |
Publications ? help Back to Top | |||
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