PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_2FB24B03E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 207aa    MW: 23537.3 Da    PI: 6.5206
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_2FB24B03E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.49.9e-081441772154
                            HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            k +yp+++++++L +++gL+ +q+ +WF N+R +
  Traes_6AS_2FB24B03E.1 144 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 177
                            469*****************************87 PP
2ELK27.56.9e-1098119122
                    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                            ELK +L+++Y+++L+++++E++
  Traes_6AS_2FB24B03E.1  98 ELKSELKQGYKEKLVDIREEIM 119
                            9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037919.9E-12141IPR005541KNOX2
SMARTSM012566.2E-14142IPR005541KNOX2
PfamPF037893.1E-698119IPR005539ELK domain
PROSITE profilePS512139.8398118IPR005539ELK domain
SMARTSM011888.3E-498119IPR005539ELK domain
PROSITE profilePS5007111.515118181IPR001356Homeobox domain
SuperFamilySSF466896.84E-16120183IPR009057Homeodomain-like
SMARTSM003894.9E-10120185IPR001356Homeobox domain
CDDcd000865.98E-11121182No hitNo description
Gene3DG3DSA:1.10.10.603.3E-24125181IPR009057Homeodomain-like
PfamPF059204.6E-18138177IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MTHYVLLLCS FKEQLQQHVR VHAMEAVMGC WELEQSLQSL TGASPGEGTG ATMSDDEDNQ  60
VDSEANMFDG NDGSDGMGFG PLILTEGERS LIERVRHELK SELKQGYKEK LVDIREEIMR  120
KRRAGKLPGD TAATLKAWWQ AHSKWPYPTE DDKARLVQET GLQLKQINNW FINQRKRNWH  180
SSNTASSSEK TKKKRNVTGN DGTEQSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174194RKRNWHSSNTASSSEKTKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195853.11e-153homeobox protein knotted-1-like 2 isoform X1
SwissprotQ0E3C31e-145KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A3B6NP121e-153A0A3B6NP12_WHEAT; Uncharacterized protein
TrEMBLA0A446V9861e-153A0A446V986_TRITD; Uncharacterized protein
STRINGTraes_6AS_2FB24B03E.11e-154(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-121KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]