PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_2F376689A.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 368aa    MW: 39929.6 Da    PI: 8.3391
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_2F376689A.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.11.3e-303989151
                G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                           kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQ
  Traes_6AS_2F376689A.2 39 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 89
                           79************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-293689IPR009057Homeodomain-like
PROSITE profilePS5129410.59136102IPR017930Myb domain
SuperFamilySSF466898.24E-143890IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-213990IPR006447Myb domain, plants
PfamPF002491.3E-74189IPR001005SANT/Myb domain
PfamPF143791.7E-25149196IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010088Biological Processphloem development
GO:0010089Biological Processxylem development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MFSSKKATSS SAGAVAVQGG GAPMCVQGDS GLVLTTDPKP RLRWTVELHE RFVDAVAQLG  60
GPDKATPKTI MRVMGVKGLT LYHLKSHLQV RPAMCVLLHP LIRKFRLGKQ PHKDFNDHAV  120
KDAAAAMEMH RNAASSSGIM GRNMNDRNVH MNEAIRMQME VQRRLHEQLE VQKHLQMRIE  180
AQGKYMQSIL EKAYQTLATG DVAASPTAGY KSLGSHAGVL DVCSIKDIGP ASMGFPSLQD  240
LHLYGGGHLD LQQQQPMESF FACSDGGGIG SLGKKRSNQY AGGKSPMMWG DDDDGDEDDK  300
GDQLLQMAPP MMDDIDSMYE AKPMMTMSGD SAGNRGFDGG MGSKLERPSP RRPHMGAQRM  360
GSPSVIYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-163989151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-163989151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-163989151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-163989151Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519550.0JF951955.1 Aegilops tauschii clone TaMYB72 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150564.10.0myb family transcription factor APL-like isoform X2
SwissprotQ9SAK57e-96APL_ARATH; Myb family transcription factor APL
TrEMBLA0A3B6NP230.0A0A3B6NP23_WHEAT; Uncharacterized protein
TrEMBLA0A446VA270.0A0A446VA27_TRITD; Uncharacterized protein
STRINGTraes_6AS_2F376689A.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25043890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.23e-82G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  5. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]