PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6AS_1BF082306.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GATA

Protein Properties

Length: 342aa MW: 36876.5 Da PI: 8.5828

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6AS_1BF082306.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.8	1.3e-17	177	210	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + Traes_6AS_1BF082306.1 177 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 210 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	5.23E-13	168	211	No hit	No description
SMART	SM00401	6.9E-19	171	223	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.9E-14	175	210	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	12.268	175	207	IPR000679	Zinc finger, GATA-type
CDD	cd00202	8.23E-15	176	208	No hit	No description
PROSITE pattern	PS00344	0	177	202	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.5E-15	177	210	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MSTIYMSQLS TLPLMDGDQD QGHFQAFHLP KGPPILFPFM IDNPVEHQGQ AYGDQHSRQQ 60 FFGESNQQFN DHMMMSGGSA DVFATCSPFG PTIQSIGSDM IQRSSYNSYD FEATHAGDGS 120 TSQWASAKPP VKMRIMRKAP TNDHQGGTAR KPRRRAQAHQ GDESQQLQHP MGVIRVCSDC 180 NTTKTPLWRS GPCGPKSLCN ACGIRQRKAR RAMAAAAATA ATNGGVASAS SGGVAEGATQ 240 ASDASQAVKA TKKEKRAVDL DRSLPFKKRC KMVDHPTVTS TKAVAVDATP KDQDHVVAED 300 GAMVERLSKA DPQAAFTHGF MRDEITDAAM LLMTLSCGLV RS

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MSTIYMSQLS TLPLMDGDQD QGHFQAFHLP KGPPILFPFM IDNPVEHQGQ AYGDQHSRQQ  60
FFGESNQQFN DHMMMSGGSA DVFATCSPFG PTIQSIGSDM IQRSSYNSYD FEATHAGDGS  120
TSQWASAKPP VKMRIMRKAP TNDHQGGTAR KPRRRAQAHQ GDESQQLQHP MGVIRVCSDC  180
NTTKTPLWRS GPCGPKSLCN ACGIRQRKAR RAMAAAAATA ATNGGVASAS SGGVAEGATQ  240
ASDASQAVKA TKKEKRAVDL DRSLPFKKRC KMVDHPTVTS TKAVAVDATP KDQDHVVAED  300
GAMVERLSKA DPQAAFTHGF MRDEITDAAM LLMTLSCGLV RS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250\|UniProtKB:Q9SZI6, ECO:0000269\|PubMed:23548780}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269\|PubMed:23548780}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK360760	0.0	AK360760.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1124O05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158916.1	0.0	putative GATA transcription factor 22
Swissprot	Q6YW48	1e-130	CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBL	A0A3B6NQI5	0.0	A0A3B6NQI5_WHEAT; Uncharacterized protein
STRING	Traes_6AS_1BF082306.1	0.0	(Triticum aestivum)
STRING	Traes_6AS_1BF0823061.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1893	38	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56860.1	8e-20	GATA family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Behringer C,Schwechheimer C B-GATA transcription factors - insights into their structure, regulation, and role in plant development. Front Plant Sci, 2015. 6: p. 90 [PMID:25755661]