PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_6AL_FD6EC5EA9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 388aa MW: 40076.8 Da PI: 5.9242 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.3 | 5.1e-12 | 202 | 247 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Traes_6AL_FD6EC5EA9.1 202 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 247 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.32E-17 | 195 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.39 | 197 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-16 | 199 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.61E-13 | 201 | 251 | No hit | No description |
Pfam | PF00010 | 2.5E-9 | 202 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 203 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 388 aa Download sequence Send to blast |
MQPAGREMHG GGQGQDDFFE QMLSALPTAW AELGSVRPPW ELQAAGAPPH DGDPGFDESA 60 LLASRLRHNQ ISGGGGDDKP PPAMLPRHGL DGGGFLPLPL FTDRSREDLQ GANQALFDGF 120 GAAGMHAAGA AQPPFGQVSQ EPPPRPALAL FRVSSVALTE LCLLSPRASK AGSMPPPAAQ 180 GGAAAPPRQR QRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT DKASMLDEII 240 DYVKFLQLQV KVLSMSRLGG AAAVGPLVAG LSSESSGNGN GTSSSGDGNG DDDNGGSTLR 300 ATEQQVARLM EEDMGTAMQY LQGKGLCLMP ISLASVISSA TSSSLRSATR PAGNAGGPLH 360 EGGSPASPQL VNSMGTDGSR TIGDGSGQ |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 206 | 211 | RLRRER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK374225 | 0.0 | AK374225.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3058A22. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170436.1 | 1e-178 | transcription factor bHLH82-like | ||||
TrEMBL | A0A3B6NWM5 | 0.0 | A0A3B6NWM5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446VS71 | 0.0 | A0A446VS71_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AL_FD6EC5EA9.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1419 | 37 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24260.1 | 2e-35 | LJRHL1-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|