PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_FACBEB134.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 358aa    MW: 37704.4 Da    PI: 6.7479
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_FACBEB134.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.3e-09158205455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Traes_6AL_FACBEB134.1 158 SHSLAERVRRERISERMRYLQELVPGC----DKVTGKAGMLDEIINYVQSLQ 205
                            8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.23E-16152221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.12E-10152209No hitNo description
Gene3DG3DSA:4.10.280.102.6E-16154216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.504154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6158205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-9160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAHCGGGQAA SVESHFQGLL DDDDKYRALC GAFGYLQQQE WPDLSGACYS AFGAPPPPGA  60
ATQATSNGAG NSFTCSGSAS SGGGSAKRKP DAYVDAKDDC KRPRGKQQLC DPGEAGGAAK  120
GRPEKPKACA RKKPEPAAAG QKTDYIHVRA RRGQATDSHS LAERVRRERI SERMRYLQEL  180
VPGCDKVTGK AGMLDEIINY VQSLQKQVEF LSMKIAASNP VVNFNIVDDL FGGRRMNQAC  240
GPAAALPAMT LPMHQGQLDP SCLQMSSATM QQMQQPAAGF GLDMLVSSSY PAAQSAPPSA  300
AATPVSMSAS ATASVDSCLD VNGAAAWDIA SQHLFSGFDA QFQSVQSDCL LDNLKMEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3602380.0AK360238.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1113K05.
GenBankAK3606200.0AK360620.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200434.10.0transcription factor bHLH137-like
TrEMBLA0A3B6NR360.0A0A3B6NR36_WHEAT; Uncharacterized protein
STRINGTraes_6AL_FACBEB134.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.16e-37bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]