PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_6AL_F5BFFCA3E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 185aa MW: 19775.4 Da PI: 9.9488 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.6 | 2.9e-25 | 93 | 136 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e Traes_6AL_F5BFFCA3E.1 93 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 136 79***************************************998 PP | |||||||
2 | QLQ | 64.3 | 3e-22 | 21 | 56 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+q+L++Q+l+yKy+a+++P+P++Ll+++++ Traes_6AL_F5BFFCA3E.1 21 PFTATQWQELEHQALIYKYMASGVPIPSDLLLPLRR 56 9********************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.6E-11 | 20 | 56 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.425 | 21 | 56 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.8E-16 | 21 | 54 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.573 | 93 | 137 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.7E-21 | 94 | 136 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 185 aa Download sequence Send to blast |
MMMMGGRAGA GGVGAGGGRC PFTATQWQEL EHQALIYKYM ASGVPIPSDL LLPLRRSFLL 60 DSALATSPSL AFPPQAALGW GCFGMGFGRK AEDPEPGRCR RTDGKKWRCS KEAYPDSKYC 120 EKHMHRGKNR SRKPVEMSLA TPPPPPSSSA SSSSSNVHSA VNVATTTTSP APSYHRHAAA 180 THDTT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353813 | 0.0 | AK353813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002P02. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156076.1 | 1e-132 | growth-regulating factor 1-like isoform X1 | ||||
Swissprot | Q6AWY8 | 9e-81 | GRF1_ORYSJ; Growth-regulating factor 1 | ||||
TrEMBL | A0A1D6S7X5 | 1e-131 | A0A1D6S7X5_WHEAT; Growth regulating factor 1-A1 | ||||
TrEMBL | A0A446VQE9 | 1e-131 | A0A446VQE9_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AL_F5BFFCA3E.1 | 1e-135 | (Triticum aestivum) | ||||
STRING | Traes_6DL_4C3F04219.1 | 1e-131 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13960.1 | 6e-49 | growth-regulating factor 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|