PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_E54708BB8.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 79aa MW: 8917.34 Da PI: 6.8203 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.9 | 1.5e-07 | 1 | 38 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R++i +++ +L+el+P+ +K++ +++LekA Y+k Lq Traes_6AL_E54708BB8.1 1 REKISERLRTLQELVPNG-----TKVDMVTMLEKAFSYVKFLQ 38 89**************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-10 | 1 | 45 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.3E-5 | 1 | 38 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.65E-9 | 1 | 42 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-11 | 1 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0064 | 1 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.779 | 1 | 37 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
REKISERLRT LQELVPNGTK VDMVTMLEKA FSYVKFLQLQ VKVLATDEFW PAQGGTAPEI 60 SQVKEALDAI LSLQRGQLN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372884 | 5e-54 | AK372884.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3015A08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155972.1 | 1e-47 | putative transcription factor bHLH086 | ||||
Swissprot | Q9FJ00 | 8e-38 | BH086_ARATH; Putative transcription factor bHLH086 | ||||
TrEMBL | A0A446VL46 | 7e-49 | A0A446VL46_TRITD; Uncharacterized protein | ||||
TrEMBL | M7ZNX3 | 7e-49 | M7ZNX3_TRIUA; Transcription factor bHLH83 | ||||
TrEMBL | M8BPV5 | 2e-49 | M8BPV5_AEGTA; Uncharacterized protein | ||||
STRING | EMT23828 | 4e-50 | (Aegilops tauschii) | ||||
STRING | Traes_6AL_E54708BB8.1 | 7e-51 | (Triticum aestivum) | ||||
STRING | TRIUR3_27166-P1 | 1e-49 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1412 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37800.1 | 4e-40 | RHD SIX-LIKE 1 |
Publications ? help Back to Top | |||
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