PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_DD0E18465.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family E2F/DP
Protein Properties Length: 318aa    MW: 35432.9 Da    PI: 8.0775
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_DD0E18465.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP80.12e-2574154171
                E2F_TDP   1 rkeksLrlltqkflklleksee.givtlnevakeLvse.....dvknkrRRiYDilNVLealnliek....kekneirwkg 71 
                            rkeksL+lltq+f+kl+ + e+  +++l+e+ak L+ e     ++++k+RR+YDi+NVL++l+liek    ++k+++rw g
  Traes_6AL_DD0E18465.2  74 RKEKSLGLLTQNFVKLFLTMEQvSTISLDEAAKFLLGEgheesNMRTKVRRLYDIANVLSSLKLIEKtqvdTRKPAFRWLG 154
                            79*****************9999**********************************************999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.1E-2271155IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.7E-3074154IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.0E-2075154IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.44E-1376155IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MALRELKERA LREKSGLAPL PAEELSAANM SDDEDDDKLG DPEAEREGEK LSQTVDNPSD  60
MPDAPPCRLR SDHRKEKSLG LLTQNFVKLF LTMEQVSTIS LDEAAKFLLG EGHEESNMRT  120
KVRRLYDIAN VLSSLKLIEK TQVDTRKPAF RWLGMAGKPK AENGVTIVAS PARKTLSNKR  180
VFGTELTNIG INRSQLEPTT QKKAKLAQGG ADILKSYNVA AQKQPGQVNK SGFVYGPFHP  240
SCARKQEPDD CNNVGQRAIA HDWESLADSF RPQYQNPALG DLFAHYVDAW KSWYSEFSQG  300
SSIMQQHLGS SVNNKRFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-1474148152232Transcription factor E2F8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187635.10.0E2F transcription factor-like E2FE isoform X1
TrEMBLA0A3B6NV190.0A0A3B6NV19_WHEAT; Uncharacterized protein
TrEMBLA0A446VNR90.0A0A446VNR9_TRITD; Uncharacterized protein
STRINGTraes_6AL_DD0E18465.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.26e-61DP-E2F-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]