PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_DAA2D7F8A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 398aa MW: 43154.4 Da PI: 4.592 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 8.9e-18 | 133 | 181 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r+++ +g+W+AeIrdps+ r++lg+f +aeeAa+a++ +++++g Traes_6AL_DAA2D7F8A.1 133 FRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFNSAEEAARAYDVEARRIRG 181 8*******.**********965...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-31 | 132 | 190 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.354 | 132 | 189 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-36 | 132 | 195 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-21 | 133 | 190 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.5E-10 | 133 | 144 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.20E-31 | 133 | 190 | No hit | No description |
Pfam | PF00847 | 1.6E-10 | 133 | 181 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 155 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MCGGAILKDL KVPAPARKVT AAVLWPEKNK PKRADGGGWR LAGLGRRGGR GLDDGEEDFQ 60 ADFEEFEADS GDSDVELGRA GVAGKDGDDE VVEIKPFAAV KRSLSQDDLS TMTTAGFDGP 120 AQRSAKRKRK NEFRGIRQRP WGKWAAEIRD PSKGVRVWLG TFNSAEEAAR AYDVEARRIR 180 GKKAKVNFPE EPTVPQKRRA CPAAPKVPKS SVAQEPTVIP AVNNLANPNA FVYPSADFAS 240 KQPLVQPDNM PFVPAINSAA SVEAPVMNMY SDQGSNSFGC SDLGWEYDTK TPDISSIAPI 300 STIAEGTESA VLQSKTYNPA VIAEGAESAP VQSNTYNSVV PPVMENNAVD FEPWMRFLLD 360 DGVDEPIDSL LNFDVPQDVV GNMDLWSFDD MPICGKIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 131 | 189 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-19 | 132 | 189 | 5 | 63 | ATERF1 |
3gcc_A | 2e-19 | 132 | 189 | 5 | 63 | ATERF1 |
5wx9_A | 9e-19 | 132 | 194 | 14 | 77 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ711058 | 0.0 | FJ711058.1 Dasypyrum villosum putative ethylene responsive element binding protein (EREBP) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194339.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-152 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A3B6NV51 | 0.0 | A0A3B6NV51_WHEAT; Ethylene response factor | ||||
TrEMBL | A0A446VR37 | 0.0 | A0A446VR37_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AL_DAA2D7F8A.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.2 | 8e-38 | related to AP2 2 |