PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_DA27ABCA61.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TCP
Protein Properties Length: 404aa    MW: 40780.9 Da    PI: 9.4143
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_DA27ABCA61.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.71.7e-41602362137
                     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 
                              +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s+
  Traes_6AL_DA27ABCA61.2  60 VPKRTSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSI 146
                             689******************************************************************999989999999998888 PP

                     TCP  88 g...................................kaaksaa.kskksqksaasalnlakesrakarar....are.rtrekmrik 133
                             +                                   + ++s++ +   + +s +  l+++ + +a a a     +r+ r++++m+++
  Traes_6AL_DA27ABCA61.2 147 PahlrgalpspgvrfgsradawdrvvglgyppegpaS-SSSTPsPLLLNFHSGSVGLDVQPSPSAAAAAAaadlSRKrRWEQEMQQQ 232
                             89999999999***********************963.4444447777788888778888855544444435565665666666666 PP

                     TCP 134 nkln 137
                             ++++
  Traes_6AL_DA27ABCA61.2 233 QQQQ 236
                             5554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-4464236IPR005333Transcription factor, TCP
PROSITE profilePS5136927.86166120IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDIAGDAGGG RRPNFPLQLL EKKEEQPCSS SAAGGTSGGG GNGAAAGGAA GGEMQVRKAV  60
PKRTSTKDRH TKVEGRGRRI RMPALCAARV FQLTRELGHK TDGETIEWLL QQAEPAVIAA  120
TGTGTIPANF TSLNISLRSS GSSLSIPAHL RGALPSPGVR FGSRADAWDR VVGLGYPPEG  180
PASSSSTPSP LLLNFHSGSV GLDVQPSPSA AAAAAAADLS RKRRWEQEMQ QQQQQQHQQQ  240
QQQQQYQQQM AGYTQSQMPG TVWMVPSNYS QGSGAPSGGG NGGGGGGSGE SIWTFPQVGS  300
AGAAAAVYRG SVPSGLHFMN FPTPMALLPG QQLGLGPVGG SGGGAGGSEG QMGILAALNA  360
YRTQAAEAAA GQGGGGGGGS SSQQQHGGGG GGGERHESMS TSES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272287SGAPSGGGNGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641350.0AK364135.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2022A18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179888.11e-167transcription factor TCP14-like
SwissprotQ93Z001e-55TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A3B6NTS80.0A0A3B6NTS8_WHEAT; Uncharacterized protein
STRINGTraes_6AL_DA27ABCA61.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.12e-45TCP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  3. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  4. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  5. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]