PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_D10CBA40D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 27310.3 Da PI: 10.5878 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.4 | 1.1e-15 | 89 | 136 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d++ ++G g+W++ +++ g+ R +k+c++rw +yl Traes_6AL_D10CBA40D.1 89 KGLWSPEEDQKLRDYILRHGHGCWSALPAKAGLQRNGKSCRLRWINYL 136 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.4e-17 | 143 | 187 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g +++eE+e +++ lG++ W++Iar+++ gRt++++k++w++yl Traes_6AL_D10CBA40D.1 143 GMFSPEEEETVMSLHAALGNK-WSRIARHLP-GRTDNEVKNYWNSYL 187 569******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.819 | 84 | 136 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.79E-29 | 86 | 183 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-11 | 88 | 138 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-14 | 89 | 136 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-22 | 90 | 143 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.58E-10 | 92 | 136 | No hit | No description |
PROSITE profile | PS51294 | 25.123 | 137 | 191 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-14 | 141 | 189 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 143 | 187 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-26 | 144 | 190 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.00E-11 | 145 | 187 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
FVYFPDDTNT PPFHGYKTRT YCSPLETPER SSISIPRLEP EASAAAAAAS CRPTSPRFRA 60 ALRRSSACKQ ASKAMGCKAC DKPRPSYRKG LWSPEEDQKL RDYILRHGHG CWSALPAKAG 120 LQRNGKSCRL RWINYLRPGL KHGMFSPEEE ETVMSLHAAL GNKWSRIARH LPGRTDNEVK 180 NYWNSYLKKR VEGGKETPPA ASSAADSDGS QSPSPGEFSA XXXXXXXXXX RSRRTSRRRP 240 TRAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 85 | 192 | 3 | 109 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038744 | 1e-145 | BT038744.1 Zea mays full-length cDNA clone ZM_BFb0323B03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168350.1 | 4e-91 | transcription factor LAF1-like | ||||
TrEMBL | A0A3B6NSF9 | 1e-103 | A0A3B6NSF9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446VHX4 | 1e-103 | A0A446VHX4_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AL_D10CBA40D.1 | 1e-170 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 4e-57 | myb domain protein 19 |
Publications ? help Back to Top | |||
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