PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_C640DBC9E.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 359aa    MW: 40246.4 Da    PI: 7.095
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_C640DBC9E.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-073554626
                           -SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                           C  f+++G C+yG+rC++ H+
  Traes_6AL_C640DBC9E.2 35 CT-FYQNGVCSYGSRCRYEHV 54
                           66.6666***********997 PP
2zf-CCCH23.97.5e-08139160426
                            ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                            ++C+ fa+ GtC+yG  C+ +Hg
  Traes_6AL_C640DBC9E.2 139 PICS-FAAAGTCPYGKECPQMHG 160
                            5788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.901128IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-5227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-7426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4529IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0332956IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-53153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-53453IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-53554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.136135162IPR000571Zinc finger, CCCH-type
SMARTSM003560.017136161IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-5140160IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.0E-14189268No hitNo description
Gene3DG3DSA:3.30.40.102.8E-11197263IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00115203264No hitNo description
PfamPF000971.7E-7204261IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.371204262IPR001841Zinc finger, RING-type
SMARTSM001841.1E-6204261IPR001841Zinc finger, RING-type
PROSITE patternPS005180228237IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.058291319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.277291320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSNRSICKFF VNGACFKGDY CQFSHDWNDQ PNDVCTFYQN GVCSYGSRCR YEHVEVSSEY  60
TQPSTTAALA PSNSYLSWCP LCEGEIDVSN QTHKSLSVCS VHQSTWRFDD EDCIPEDGNS  120
LSSALTAQNQ ALHPLAHLPI CSFAAAGTCP YGKECPQMHG DPCTTCGKQC LHPYRPSEGG  180
AHIKLCKRNN KRLETLKKSE EMECSVCLDR VLSKPTAAEK RFGLLPECDH AFCITCIRKW  240
RSSSLTSSMD IDSTVKACPI CRKVSYYVIP SATWYSSKEE KQDIIDGYKA KLKSIDCRYF  300
DFGRDTCPFG GRCFYKHAYT DGRLEEPATV AVLHFHADNG SIEHARNIGL AYLLSRLHL
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3720370.0AK372037.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2145F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192975.10.0E3 ubiquitin-protein ligase makorin-like isoform X4
RefseqXP_020192977.10.0E3 ubiquitin-protein ligase makorin-like isoform X4
SwissprotQ5ZA071e-154C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A3B6NTN10.0A0A3B6NTN1_WHEAT; Uncharacterized protein
TrEMBLA0A446VLL40.0A0A446VLL4_TRITD; Uncharacterized protein
STRINGTraes_6AL_C640DBC9E.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-117C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]