PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_C32B016191.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 266aa    MW: 31039.5 Da    PI: 6.3596
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_C32B016191.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07116158145
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             r +W++ + +l++++ +q+G++ ++ I + ++  +++ q++ ++ 
  Traes_6AL_C32B016191.1 116 RAKWSKSDTDLFYQGLQQFGSN-FAMIQQLFP-DKSRDQVRQKFK 158
                             569*****************99.*********.*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159639.6E-25109190No hitNo description
SuperFamilySSF466893.66E-10110164IPR009057Homeodomain-like
PROSITE profilePS512939.691114165IPR017884SANT domain
Gene3DG3DSA:1.10.10.607.6E-5114162IPR009057Homeodomain-like
SMARTSM007178.0E-8115163IPR001005SANT/Myb domain
CDDcd001675.66E-5118159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MKDKLTERTD KKLTHRIRQK RTKVSEVKTL LEKPDHEIAH MKLSVMHLRL LQEARERIKS  60
KTILSGPSSS NQSSQFGGTD TFDPFGENYD NDRIENHVLE NATKLNYYSY MNKQTRAKWS  120
KSDTDLFYQG LQQFGSNFAM IQQLFPDKSR DQVRQKFKTE EKKHPMQVHD AILHRSRDTL  180
YLKQVIKQLN IEDLQRGMNS AQKQEVGSIE GDTGNEHVLQ DFIEEEENGS NWSDKELGTR  240
QSEAREGEHV SGNADDDLDL DVFDWY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2500790.0AK250079.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf66i09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174330.11e-164transcription factor TFIIIB component B''-like isoform X2
TrEMBLA0A446VQ500.0A0A446VQ50_TRITD; Uncharacterized protein
STRINGTraes_6AL_C32B01619.10.0(Triticum aestivum)
STRINGTraes_6AL_C32B016191.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.13e-34MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]