PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_C14335DC8.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 536aa MW: 59081.8 Da PI: 4.94 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.2 | 5.9e-31 | 56 | 199 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra. 77 lp+G++F+P+d+el+ e+L++k+ + +e+i++v+ i++++P++Lp ++++ ++ +fF++ +++y g+rk+r Traes_6AL_C14335DC8.2 56 LPAGVKFDPSDQELL-EHLEEKIGVGGskphmfI--DEFIPTVEndagICYSHPENLP-GTNKDGSSAHFFHSISNAYGCGQRKRRRi 139 799************.99****876554555332..333444422344**********.556677899*****************965 PP NAM 78 ........tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmheyrl 128 ++ +W++tgk+k+v++ +g +g kk+Lv+ykg++ g+ ktdWvmh+y+l Traes_6AL_C14335DC8.2 140 snsdrttsDEHVRWHKTGKSKPVYD-NGVMKGWKKILVLYKGSQTGGKpdKTDWVMHQYHL 199 7888865444889************.999***********9987766555*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-37 | 41 | 218 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.353 | 56 | 218 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-13 | 57 | 199 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MARSWLITCR GVAKKVRNAH CSNRQISEVG AEACRECPNC KHIIDNSDVS IQWPGLPAGV 60 KFDPSDQELL EHLEEKIGVG GSKPHMFIDE FIPTVENDAG ICYSHPENLP GTNKDGSSAH 120 FFHSISNAYG CGQRKRRRIS NSDRTTSDEH VRWHKTGKSK PVYDNGVMKG WKKILVLYKG 180 SQTGGKPDKT DWVMHQYHLG VEENEKVGEF VVSKIFYQLK TRPVDKSEAE MANEESTAFT 240 ASICPKTPMT KIPPCRPKNS PCETEQNDPG QEEETVSLAE NANNPAWCAL SSQPVEVALE 300 AGTCSLDKSL RHHEVLDSSN LENSTFDRPI LSQLMNETLN KNLCALHGLP DLHNVNLGTA 360 PTDLQITKGE NVSLVADAEN TACCSLASQD VEVTSQAGTS LVESLLHHEV SDLHNANLGT 420 PRDLQIAKEE SVSLVDEAEK WCGLASQAVD VAFHAGTSLD ESLRCHEVLD SFDHEKSLTF 480 DRPIYSQGRD GGLENNLYSL NGLPDLQGVD FGTPIDDLQG LQFYSQESLG SWLERM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 137 | RKRRR |
2 | 134 | 138 | KRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374304 | 0.0 | AK374304.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3060A12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020173042.1 | 0.0 | uncharacterized protein LOC109758588 isoform X2 | ||||
TrEMBL | A0A3B6NRG6 | 0.0 | A0A3B6NRG6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446VF90 | 0.0 | A0A446VF90_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AL_C14335DC8.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 3e-84 | NAC domain containing protein 44 |
Publications ? help Back to Top | |||
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