PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_BB7207AD1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 352aa    MW: 40188.9 Da    PI: 7.251
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_BB7207AD1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1806.1e-5671361129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWka 85 
                            +ppGfrFhPtdeelv++yL+kkv++kk++l +vik+vd+yk+ePwdL+ k k+   e+++wyfFs++dkky+tg+r+nrat++g+Wka
  Traes_6AL_BB7207AD1.1   7 VPPGFRFHPTDEELVDYYLRKKVASKKIDL-DVIKDVDLYKIEPWDLQdKcKIGMeEQNDWYFFSHKDKKYPTGTRTNRATSAGFWKA 93 
                            69****************************.9***************943433333556***************************** PP

                    NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            tg+dk++++ ++ lvg++ktLvfykgrap+g+k++W+mheyrle
  Traes_6AL_BB7207AD1.1  94 TGRDKPIYT-NHCLVGMRKTLVFYKGRAPNGQKSNWIMHEYRLE 136
                            *********.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-625156IPR003441NAC domain
PROSITE profilePS5100559.9997156IPR003441NAC domain
PfamPF023658.2E-298135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDTFSHVPPG FRFHPTDEEL VDYYLRKKVA SKKIDLDVIK DVDLYKIEPW DLQDKCKIGM  60
EEQNDWYFFS HKDKKYPTGT RTNRATSAGF WKATGRDKPI YTNHCLVGMR KTLVFYKGRA  120
PNGQKSNWIM HEYRLETNEN GATPEEGWVV CRVFKKRVAT VRRMADMNSP CWFDDHGAGG  180
GFMPDLDSPR QLGYQHHHPQ NLAPYHSQQQ QQYHCKPELE YHHLLPQEAF MQQLPHLESP  240
KPTTAYIGHG SSGGILSSTS NHPLAHDGPS RFAAQQPPMD HALYTGESSA TDWRYLDKFV  300
ASQLFSHDGT NPKEQATHSN AAVQVFQAEN KHEEALDYAS TSAGLGSAHL WK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-52715717166NO APICAL MERISTEM PROTEIN
1ut4_B7e-52715717166NO APICAL MERISTEM PROTEIN
1ut7_A7e-52715717166NO APICAL MERISTEM PROTEIN
1ut7_B7e-52715717166NO APICAL MERISTEM PROTEIN
4dul_A7e-52715717166NAC domain-containing protein 19
4dul_B7e-52715717166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155213.10.0NAC domain-containing protein 7-like
RefseqXP_020155215.10.0NAC domain-containing protein 7-like
SwissprotQ9FWX21e-117NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A3B6NSH40.0A0A3B6NSH4_WHEAT; Uncharacterized protein
STRINGTraes_6AL_BB7207AD1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23703892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-106NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]