PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_B92597EA9.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 306aa    MW: 33831.8 Da    PI: 6.9543
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_B92597EA9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.72.3e-49101471128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel..eevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                            lppGfrF P+deelv++yL+ kv+++++    + ++ evd++ +ePw+Lp  +k +++ewyfFs rd+kyatg r+nrat+sgyWkat
  Traes_6AL_B92597EA9.1  10 LPPGFRFYPSDEELVCHYLHGKVANQRFAGgaAGTMVEVDLHVHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATRSGYWKAT 97 
                            79*************************65511346***************87788999****************************** PP

                    NAM  87 gkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            gkd+ + s         + + vg++ktLvfy+grap+g+kt Wvmhe+r+
  Traes_6AL_B92597EA9.1  98 GKDRVIRSPrssssrsgRAAIVGMRKTLVFYRGRAPNGSKTCWVMHEFRI 147
                            *******99665555444444***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-587166IPR003441NAC domain
PROSITE profilePS5100555.89410166IPR003441NAC domain
PfamPF023652.0E-2711147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGLRDIEMTL PPGFRFYPSD EELVCHYLHG KVANQRFAGG AAGTMVEVDL HVHEPWELPD  60
VAKLSTNEWY FFSFRDRKYA TGLRTNRATR SGYWKATGKD RVIRSPRSSS SRSGRAAIVG  120
MRKTLVFYRG RAPNGSKTCW VMHEFRIENP HAPPKEDWVL CRVFHKKKAD TEYAMDGEQE  180
IVGGMARSAA AVSGSNYVSS SACHDPQYHH SPTAPFSSLG AGGHPYQLTS CDHHHTHGAA  240
GVSLADMDPF ADMPPLTSYD SILDFSQQLQ GGGAGLRDGA GDQCGGELMD LGLQVQEEHY  300
NYNSLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-4711694168NO APICAL MERISTEM PROTEIN
1ut4_B1e-4711694168NO APICAL MERISTEM PROTEIN
1ut7_A1e-4711694168NO APICAL MERISTEM PROTEIN
1ut7_B1e-4711694168NO APICAL MERISTEM PROTEIN
3swm_A1e-4711697171NAC domain-containing protein 19
3swm_B1e-4711697171NAC domain-containing protein 19
3swm_C1e-4711697171NAC domain-containing protein 19
3swm_D1e-4711697171NAC domain-containing protein 19
3swp_A1e-4711697171NAC domain-containing protein 19
3swp_B1e-4711697171NAC domain-containing protein 19
3swp_C1e-4711697171NAC domain-containing protein 19
3swp_D1e-4711697171NAC domain-containing protein 19
4dul_A1e-4711694168NAC domain-containing protein 19
4dul_B1e-4711694168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640020.0AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172962.10.0NAC domain-containing protein 92-like
SwissprotQ9FLJ22e-60NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A3B6NW940.0A0A3B6NW94_WHEAT; Uncharacterized protein
STRINGTraes_6AL_B92597EA9.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-71NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]