PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6AL_B272C86BE.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 311aa MW: 34202.2 Da PI: 7.2309

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6AL_B272C86BE.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.5	1.1e-48	10	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrF P+deelv++yL kv++++l+ + + evd++ +ePw+Lp +k +++ewyfFs rd+ky+tg r+nrat+sgyWkat Traes_6AL_B272C86BE.1 10 LPPGFRFYPSDEELVCHYLLSKVANQRLSGGAAgtMVEVDLHVHEPWELPDVAKLTTNEWYFFSFRDRKYTTGLRTNRATRSGYWKAT 97 79***********************76533334***********77777899************************** PP NAM 87 gkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd+ + s +++ vg++ktLvfy+grap+g kt Wvmhe+r+ Traes_6AL_B272C86BE.1 98 GKDRVIRSLrssssrsgRDAIVGMRKTLVFYRGRAPNGIKTCWVMHEFRI 147 **997555555544445*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-58	7	166	IPR003441	NAC domain
PROSITE profile	PS51005	55.318	10	166	IPR003441	NAC domain
Pfam	PF02365	4.4E-27	11	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MGLRDIEMTL PPGFRFYPSD EELVCHYLLS KVANQRLSGG AAGTMVEVDL HVHEPWELPD 60 VAKLTTNEWY FFSFRDRKYT TGLRTNRATR SGYWKATGKD RVIRSLRSSS SRSGRDAIVG 120 MRKTLVFYRG RAPNGIKTCW VMHEFRIENP HSPPKADWVL CRVFHQKKAD TEYAMDGKQE 180 PGGGGVAHKA AAVSGSNYVS SSSCYDPDQY QHSPSAPFPS LGAGGHHYQI TSCDHHHPDG 240 AAGVLHSNVD AFAGMPQLLS YETTLDFSQL PQGGGSAAAG LRDGADDQCG GALMDLGLQV 300 QEAHYNYNSL M

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-46	1	169	4	168	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-46	1	169	4	168	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-46	1	169	4	168	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-46	1	169	4	168	NO APICAL MERISTEM PROTEIN
3swm_A	4e-46	1	167	7	169	NAC domain-containing protein 19
3swm_B	4e-46	1	167	7	169	NAC domain-containing protein 19
3swm_C	4e-46	1	167	7	169	NAC domain-containing protein 19
3swm_D	4e-46	1	167	7	169	NAC domain-containing protein 19
3swp_A	4e-46	1	167	7	169	NAC domain-containing protein 19
3swp_B	4e-46	1	167	7	169	NAC domain-containing protein 19
3swp_C	4e-46	1	167	7	169	NAC domain-containing protein 19
3swp_D	4e-46	1	167	7	169	NAC domain-containing protein 19
4dul_A	3e-46	1	169	4	168	NAC domain-containing protein 19
4dul_B	3e-46	1	169	4	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK364002	0.0	AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020173052.1	0.0	NAC domain-containing protein 76-like
Swissprot	Q9S851	8e-58	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A3B6NUN8	0.0	A0A3B6NUN8_WHEAT; Uncharacterized protein
STRING	Traes_6AL_B272C86BE.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-74	NAC domain containing protein 74

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]