PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_B2256B77F.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 355aa MW: 38054.7 Da PI: 8.2041 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.8e-32 | 171 | 224 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Traes_6AL_B2256B77F.2 171 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 224 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-29 | 168 | 224 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-15 | 169 | 225 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-23 | 171 | 225 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-7 | 172 | 223 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MELFPSHPDL QLQLQINPPP ATKPMDLGFW KRALDTTAAA AATSASAAAT FTPPSIARTY 60 PSAPAAAGGG FHAAHYGAAD GHLGGLQFLQ HTQPILHEVQ DLAAMKPIRG IPVYNTSQSL 120 PFLQSQLHHH NHHHQHCYDA IGGAAGGPRS PGKVGALRLA APPAKRNSRA PRMRWTTSLH 180 ARFVHAVELL GGHERATPKS VLELMDVKDL TLAHVKSHLQ MYRTIKTTDH KPAAASSYGQ 240 AKTIIDIPDD SSFDIANTSG SESSVQQSNL DGNEHGSNMC ALWSNNSSSR GAWSFHGKSR 300 SDANPGDIKS FEDVQSQCPN VVADDAADLM SAPFRLSELV VGTKKPNLDF TLGRM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-16 | 172 | 226 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-16 | 172 | 226 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-17 | 172 | 226 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-17 | 172 | 226 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-17 | 172 | 226 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-17 | 172 | 226 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-16 | 172 | 226 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-16 | 172 | 226 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-16 | 172 | 226 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-16 | 172 | 226 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-16 | 172 | 226 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-16 | 172 | 226 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036911 | 3e-77 | BT036911.1 Zea mays full-length cDNA clone ZM_BFb0147F05 mRNA, complete cds. | |||
GenBank | KJ726829 | 3e-77 | KJ726829.1 Zea mays clone pUT3369 G2-like transcription factor (GLK47) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156179.1 | 0.0 | probable transcription factor KAN2 isoform X1 | ||||
TrEMBL | A0A3B6NQV8 | 0.0 | A0A3B6NQV8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446VK52 | 0.0 | A0A446VK52_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AL_B2256B77F.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9438 | 34 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17695.1 | 5e-43 | G2-like family protein |
Publications ? help Back to Top | |||
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