PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_AC1DA0AE6.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 655aa    MW: 72623.1 Da    PI: 5.2078
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_AC1DA0AE6.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.4e-07116138427
                            ---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                            ++C ++++ G C  G+ C+F+Hgp
  Traes_6AL_AC1DA0AE6.2 116 VPCYYYQK-GMCAKGNLCTFSHGP 138
                            79******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.852251IPR000571Zinc finger, CCCH-type
SMARTSM003560.00112250IPR000571Zinc finger, CCCH-type
PfamPF156638.6E-122377No hitNo description
PROSITE profilePS5010310.8685379IPR000571Zinc finger, CCCH-type
SMARTSM003562.85578IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286112139IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4113138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.55E-5114137IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MDSAAAQAQP THAPADEEEA RRRRGTDCVY YLASPLTCNK GSECEYRHSD AARVNPRDCW  60
YWFNGNCANA KCSFRHPPLD DLLGASATPR APQQPALQVP VPAQAVPPNG TAKPVVPCYY  120
YQKGMCAKGN LCTFSHGPQF AGNPALQPHL QLKNSNSWTK PTNSPQQSTT PAVHGELKVG  180
AQNGRPAQKQ NPTSRAYHSP GIYQNQNYPY VLSGAAKSYQ PQRSVEAESA ENVMETGEFV  240
REPSAGSSVV AGSVEDDAER SFKEGHTSSY RRASGEQNSG VRRQAHGGYE LERSSHRSSS  300
DRLVSERRLT QRESMPVTAE SSDLRHRLLK QRRLNDSRQS TQVPDRRDRR YPEDERDSHH  360
RRRGEERAAH DGLSRSRLQG RIKLPGETSL DRLGPHPHLE KERGHRDRLS PPKQTDLRAK  420
LHDRLKARSN EEVPGNLKSS VVKASSGEDA GVVNFSGPKS LAELRAKKAA YRSGENTVKN  480
AGRVARPARM TSEIVAKRDS PDLVPFDGPK PLSVILKRKR EAASADSGSM QEEQVAGQEE  540
QSLNNSRILD NDRVEANTED IEEEEEFHPE DDVMYDDDGL SPADDNTAEA AADVGKEELE  600
EGQQEDLETA AEEEYDYEAA DDANAEGEND YQEYEDDDDL EDDDDFARKV GVLIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3650990.0AK365099.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030O09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201475.10.0zinc finger CCCH domain-containing protein 19-like
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLA0A3B6NY680.0A0A3B6NY68_WHEAT; Uncharacterized protein
STRINGTraes_6AL_AC1DA0AE6.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]