PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6AL_AA5E171CD.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 989aa MW: 109107 Da PI: 8.9407

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6AL_AA5E171CD.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.4e-06	309	328	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f + G C++G++C++ H+ Traes_6AL_AA5E171CD.1 309 CHEFVK-GRCSRGASCRYVHD 328 9***.***********7 PP
2	zf-CCCH	24.2	5.7e-08	365	386	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++C+ffa+ G C++G++C++ H Traes_6AL_AA5E171CD.1 365 KRPCKFFAE-GRCRRGETCPYLH 386 689****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.64	221	245	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.958	224	246	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.126	303	330	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.08	306	329	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.2E-5	359	388	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.831	362	389	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.7E-6	362	388	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.63E-7	363	387	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-5	365	386	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 989 aa Download sequence Send to blast
MAGVARKGRS KWDTQEISPD IVEISEDDSP PKNTDDRRKD VIPTQDLTND NGKRLGESSN 60 LKPDAFMHQG STEYEQERTD GLNKDVKERQ SKASSERSHA PRMAEEGHNN DDWGKLASLE 120 KATGNQAMSR NADDRRRGDG WGTAASRGYS SRVSSGPDAW KQRTRSPSPR GAWNRSRRNR 180 SGSRSRSRER VRGRSRSRSR SPYFDRGSDW RAERGRISGG PSLLCRDFTA GRCRRGLHCR 240 IPHEDGGRRQ FDEPYPADSR ERYGHQNKDF MDPREPDDYV RSRQPRGHFD EGTWERSEPR 300 RDYRSSDQCH EFVKGRCSRG ASCRYVHDES ASHAGWRDDA RETAHVRGGP DSSFGNRTEH 360 RREQKRPCKF FAEGRCRRGE TCPYLHEEAP QSQMAPGASD EPPKYSGGRT PRGNYSNWGE 420 ETNATHAGSH ILSRDDRENP GSQHTARSDT GYGYKNRQLE DAGRDQYQII PQEDFCSQGR 480 NKPEMSASKQ PQFSSPIQTS ADSMNNDKVS DMDGLSASAT TGNLNMQTGI NAANLLGGQS 540 LSQIAQSQDA VPQTSTAPIH PVTSQQQDGT SMFPFNIQQH ESNFSLHPNR QDQFSNFSLH 600 PDRQDQFVAS QATANNSAPS MQNQPVAAPY MGHGQHSYTL GSQALPAFNG HNFSGAGQVP 660 QDRPTPFYAG QSQATVDMSN PNQESGTHSM QNTHSFQPVA PNMQAHSQAL QGLSGVPSQD 720 TGTQSIQNAH NFQPVAPPYM QSRGQTLQGL SILPSSSSAD MPGAPPVPPN EEEIRRSLTS 780 LAATLIMQPG TVAGLQLPQP ILNPSLMASL SAVEPSQWPW AQQQQAGTTQ LARSEQQAPQ 840 QTLPAPSTAV GSSNGNNPAP QSVGQTAATS VVTAPQAAEN KKVEAKAKDS DGEQDGDKNK 900 KGNKEESKAL KMFKLALADF VKDVLKPTWK EGQLTREVHK TIVKKVVDKV TSTVENTPPT 960 KEKIDVYMSY SKEKLSKLVQ AYVGKYVKA

Sequence ? help Back to Top

Protein Sequence Length: 989 aa Download sequence Send to blast

MAGVARKGRS KWDTQEISPD IVEISEDDSP PKNTDDRRKD VIPTQDLTND NGKRLGESSN  60
LKPDAFMHQG STEYEQERTD GLNKDVKERQ SKASSERSHA PRMAEEGHNN DDWGKLASLE  120
KATGNQAMSR NADDRRRGDG WGTAASRGYS SRVSSGPDAW KQRTRSPSPR GAWNRSRRNR  180
SGSRSRSRER VRGRSRSRSR SPYFDRGSDW RAERGRISGG PSLLCRDFTA GRCRRGLHCR  240
IPHEDGGRRQ FDEPYPADSR ERYGHQNKDF MDPREPDDYV RSRQPRGHFD EGTWERSEPR  300
RDYRSSDQCH EFVKGRCSRG ASCRYVHDES ASHAGWRDDA RETAHVRGGP DSSFGNRTEH  360
RREQKRPCKF FAEGRCRRGE TCPYLHEEAP QSQMAPGASD EPPKYSGGRT PRGNYSNWGE  420
ETNATHAGSH ILSRDDRENP GSQHTARSDT GYGYKNRQLE DAGRDQYQII PQEDFCSQGR  480
NKPEMSASKQ PQFSSPIQTS ADSMNNDKVS DMDGLSASAT TGNLNMQTGI NAANLLGGQS  540
LSQIAQSQDA VPQTSTAPIH PVTSQQQDGT SMFPFNIQQH ESNFSLHPNR QDQFSNFSLH  600
PDRQDQFVAS QATANNSAPS MQNQPVAAPY MGHGQHSYTL GSQALPAFNG HNFSGAGQVP  660
QDRPTPFYAG QSQATVDMSN PNQESGTHSM QNTHSFQPVA PNMQAHSQAL QGLSGVPSQD  720
TGTQSIQNAH NFQPVAPPYM QSRGQTLQGL SILPSSSSAD MPGAPPVPPN EEEIRRSLTS  780
LAATLIMQPG TVAGLQLPQP ILNPSLMASL SAVEPSQWPW AQQQQAGTTQ LARSEQQAPQ  840
QTLPAPSTAV GSSNGNNPAP QSVGQTAATS VVTAPQAAEN KKVEAKAKDS DGEQDGDKNK  900
KGNKEESKAL KMFKLALADF VKDVLKPTWK EGQLTREVHK TIVKKVVDKV TSTVENTPPT  960
KEKIDVYMSY SKEKLSKLVQ AYVGKYVKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	199	RVRGRSRSRSR
2	191	199	RGRSRSRSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249720	0.0	AK249720.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf45g01, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174956.1	0.0	zinc finger CCCH domain-containing protein 55-like isoform X1
Swissprot	Q6YYC0	0.0	C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBL	A0A3B6NW41	0.0	A0A3B6NW41_WHEAT; Uncharacterized protein
TrEMBL	A0A446VQW1	0.0	A0A446VQW1_TRITD; Uncharacterized protein
STRING	Traes_6AL_AA5E171CD.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7766	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	8e-09	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]