PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_A93C6F2FC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 343aa MW: 37267.1 Da PI: 9.9718 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.5 | 3.1e-27 | 124 | 174 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl ++s Traes_6AL_A93C6F2FC.1 124 KRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSQFAS 174 79*********************************************9986 PP | |||||||
2 | K-box | 55.6 | 2.4e-19 | 205 | 285 | 18 | 98 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++a+L++++ + +R++ Ge+Le Ls+ eLqqLe++Le++l ++ ++K++ +leqi+el +k +l een++Lr+++ Traes_6AL_A93C6F2FC.1 205 HSKYANLNDQLAEASLRLRQMRGEELEGLSVDELQQLEKNLETGLHRVLQTKDQQFLEQINELHRKSSQLAEENMKLRNQV 285 345666666666666899************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-36 | 116 | 175 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.623 | 116 | 176 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.38E-39 | 117 | 190 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 118 | 172 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-30 | 118 | 189 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-24 | 118 | 138 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-25 | 125 | 172 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-24 | 138 | 153 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-24 | 153 | 174 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.966 | 201 | 291 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.2E-17 | 207 | 285 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
SSRGLARAAV GPVFISSTPP FANRSKASAG PGLETPNPPR RLLHSTSPPP FPLPSSPFAS 60 LLPSIPIASQ PPHRRVSRAS TVLRACLPGR ASARAVAGLE RGRGRGDRGR EGGDAMARER 120 REIKRIESAA ARQVTFSKRR RGLFKKAEEL SVLCDADVAL IVFSSTGKLS QFASSSMNEI 180 IDKYSTHSKN LGKTDQPALD LNLEHSKYAN LNDQLAEASL RLRQMRGEEL EGLSVDELQQ 240 LEKNLETGLH RVLQTKDQQF LEQINELHRK SSQLAEENMK LRNQVGQIPT AGKLVVADTE 300 NVVAEDGQSS ESVMTALHSG SSQDNDDGSD VSLKLGLPCL PWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-18 | 116 | 189 | 1 | 74 | MEF2C |
5f28_B | 1e-18 | 116 | 189 | 1 | 74 | MEF2C |
5f28_C | 1e-18 | 116 | 189 | 1 | 74 | MEF2C |
5f28_D | 1e-18 | 116 | 189 | 1 | 74 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ512332 | 0.0 | DQ512332.1 Triticum aestivum MADS-box transcription factor TaAGL11 (AGL11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167460.1 | 1e-165 | MADS-box transcription factor 22-like | ||||
Swissprot | Q9XJ66 | 1e-139 | MAD22_ORYSJ; MADS-box transcription factor 22 | ||||
TrEMBL | A0A1D6ABV4 | 1e-164 | A0A1D6ABV4_WHEAT; Short vegetative phase | ||||
STRING | Traes_6AL_A93C6F2FC.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1221 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 7e-72 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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