PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_A93C6F2FC.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 343aa    MW: 37267.1 Da    PI: 9.9718
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_A93C6F2FC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.53.1e-27124174151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                            krie+   rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl  ++s
  Traes_6AL_A93C6F2FC.1 124 KRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSQFAS 174
                            79*********************************************9986 PP

2K-box55.62.4e-192052851898
                  K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                            + ++a+L++++ +    +R++ Ge+Le Ls+ eLqqLe++Le++l ++ ++K++ +leqi+el +k  +l een++Lr+++
  Traes_6AL_A93C6F2FC.1 205 HSKYANLNDQLAEASLRLRQMRGEELEGLSVDELQQLEKNLETGLHRVLQTKDQQFLEQINELHRKSSQLAEENMKLRNQV 285
                            345666666666666899************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-36116175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.623116176IPR002100Transcription factor, MADS-box
CDDcd002652.38E-39117190No hitNo description
PROSITE patternPS003500118172IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-30118189IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-24118138IPR002100Transcription factor, MADS-box
PfamPF003193.2E-25125172IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-24138153IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-24153174IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.966201291IPR002487Transcription factor, K-box
PfamPF014862.2E-17207285IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
SSRGLARAAV GPVFISSTPP FANRSKASAG PGLETPNPPR RLLHSTSPPP FPLPSSPFAS  60
LLPSIPIASQ PPHRRVSRAS TVLRACLPGR ASARAVAGLE RGRGRGDRGR EGGDAMARER  120
REIKRIESAA ARQVTFSKRR RGLFKKAEEL SVLCDADVAL IVFSSTGKLS QFASSSMNEI  180
IDKYSTHSKN LGKTDQPALD LNLEHSKYAN LNDQLAEASL RLRQMRGEEL EGLSVDELQQ  240
LEKNLETGLH RVLQTKDQQF LEQINELHRK SSQLAEENMK LRNQVGQIPT AGKLVVADTE  300
NVVAEDGQSS ESVMTALHSG SSQDNDDGSD VSLKLGLPCL PWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18116189174MEF2C
5f28_B1e-18116189174MEF2C
5f28_C1e-18116189174MEF2C
5f28_D1e-18116189174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5123320.0DQ512332.1 Triticum aestivum MADS-box transcription factor TaAGL11 (AGL11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167460.11e-165MADS-box transcription factor 22-like
SwissprotQ9XJ661e-139MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA0A1D6ABV41e-164A0A1D6ABV4_WHEAT; Short vegetative phase
STRINGTraes_6AL_A93C6F2FC.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.17e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]