PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_842E10085.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 178aa MW: 19544.6 Da PI: 8.4983 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.5 | 9.7e-08 | 3 | 31 | 22 | 55 |
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55 L++l+P++ K +Ka++L A+eY+k+Lq Traes_6AL_842E10085.1 3 ALQSLVPNS-----SKTDKASMLDDAIEYLKHLQ 31 699999997.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.297 | 1 | 30 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-12 | 1 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.01E-8 | 1 | 35 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-11 | 1 | 51 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-5 | 3 | 31 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MKALQSLVPN SSKTDKASML DDAIEYLKHL QLQVQMLSMR NGMYRPSVNL PGAAGHLPTS 60 QMCAALNQNS VDASSNPPAA MLPMNHFLGA MSGARPSFDH PNQDRPRHEP LVLSSVPCTT 120 TREPPFLLGP SQESPLRSLQ LTLPAEVTVL LSAEHKPPLL CKCRKANCQY FPYTVHLF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360656 | 1e-173 | AK360656.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122L11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165312.1 | 2e-83 | transcription factor SPATULA-like isoform X1 | ||||
Refseq | XP_020165317.1 | 2e-83 | transcription factor SPATULA-like isoform X2 | ||||
TrEMBL | A0A453PYV1 | 1e-102 | A0A453PYV1_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453PZ94 | 1e-103 | A0A453PZ94_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6AL_842E10085.1 | 1e-128 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3336 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 7e-20 | bHLH family protein |
Publications ? help Back to Top | |||
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